CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            N +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RD PPG+KVG
Sbjct:  175 NKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVG 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            N +H ++ K   +  VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:  178 NRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   10 HKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  172 HYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   10 HKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  172 HYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:  177 HHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            N +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:  175 NKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            N +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:  175 NKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +++K+R K   WP+VRGVAMN V+HP GGG  QH G   TV R  PPG+KVG I
Sbjct:  175 SFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y+  R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG I
Sbjct:  180 YYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK + +   +P+V GVAMNPV+HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  177 YHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL2_NATPD1.754e-1256.6050S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_METS31.754e-1258.1850S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_THEVO2.291e-1266.0050S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_THEAC2.291e-1266.0050S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_HALWD2.291e-1258.8250S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_HALSA2.291e-1256.6050S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS32.291e-1256.6050S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_METTP2.993e-1257.4150S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_METKA2.993e-1260.3850S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_METBF2.993e-1258.4950S ribosomal protein L2P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
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