CX299939

Overview
NameCX299939
Unique NameCX299939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.958e-62
Identity = 118/226 (52.21%), Postives = 162/226 (71.68%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673
            G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE++R+G  HQAGSDSLLT   F  ++  FF   ++  KY G LYGLG     V+NG
Sbjct:   52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.169e-62
Identity = 113/217 (52.07%), Postives = 163/217 (75.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG 661
            G F+SS +Y YQ L+ NVD+LK+IQLGLTF++E G  P+ G +    WQFNF+ F++ ED+++ DSI+LL  SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT   LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G  HQAGSDSLLT   F  +K  FF  S++  KY G LYGLG
Sbjct:   52 GEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.169e-62
Identity = 113/217 (52.07%), Postives = 163/217 (75.12%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG 661
            G F+SS +Y YQ L+ NVD+LK+IQLGLTF++E G  P+ G +    WQFNF+ F++ ED+++ DSI+LL  SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT   LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G  HQAGSDSLLT   F  +K  FF  S++  KY G LYGLG
Sbjct:   52 GEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.528e-58
Identity = 118/214 (55.14%), Postives = 152/214 (71.03%), Query Frame = 2
Query:   41 YHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFCNS-LHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRXLKXNFF-SSSLEKYAGVLYGLGV 664
            Y Y  LKSNVD L LIQ+GLT SD +GNLP  G  K    +W+FNFR+FDV  D  A DSIELL++ GI+F +N   G+++ RF ELMMSSG++ ++S+ WVTFHS YDFGYL+K+LT + LP    EF  L+R +F   VYD+KH+M+FC   L+GGL+++A  LEV R VG CHQAGSDSLLT   F+ ++  +F     EK+AGVLYGL V
Sbjct:   64 YLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.115e-56
Identity = 117/212 (55.19%), Postives = 150/212 (70.75%), Query Frame = 2
Query:   47 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRXLKXNFF-SSSLEKYAGVLYGLGV 664
            Y  LK+NVD L LIQ+GLT SD NGNLP  G D +   +W+FNFR+FDV  D  A DSIELL++ GI+F +N   G+++ RF ELMMSSG+V ++ + WVTFHS YDFGYL+K+LT + LP    EF  ++R+ F   VYD+KH+MKFC   L GGL+++A  LEV R VG CHQAGSDSLLT   F+ ++  +F     EK+AGVLYGL V
Sbjct:   68 YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54
Identity = 109/223 (48.88%), Postives = 152/223 (68.16%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE-KYAGVLYGLGVENGQIL 682
            G FKSS +YHYQTL++NVD LK+IQ+GL  SDE GN P     + C WQFNF  F++ +D++A +SIELL +SGI+F K+ E+GI+   F EL++ SG+VL + + W+TFHSGYDF YLLK +T   LP    EF+ ++ IYFP  YDIK++MK   +   GL  +A+ L++ R+G  HQAGSD+LLTA  F  ++  +F  S++ +    LYGLG   G +L
Sbjct:   62 GVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGLG-STGSVL 278          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.858e-46
Identity = 99/223 (44.39%), Postives = 144/223 (64.57%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCN----SLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYA----GVLYGLG 661
            G+F+S  +++YQ +  NV+MLKLIQ+G    ++ G LP  G     VWQFNF  F   ED+F+++S+E+L+Q+GI+FT     GI    FGEL+ +SG++    + W+TF SGYDFGYLLK +T  +LP  +  FF   +  FPT +DIK L++  N     L GGL ++A+ L+V+R G+ HQAGSD+LLTA+TF  +K  FF  +  + A    G ++GLG
Sbjct:   63 GTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGLG 280          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.370e-38
Identity = 87/234 (37.18%), Postives = 131/234 (55.98%), Query Frame = 2
Query:   17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGICHQAGSDSLLTASTF---RXLKXNFFSSSLE--KYAGVLYGL 658
            G+F+S  +YHYQT+++NVD L  IQLGL+ SD NGN P  G      WQFNF EFD  ++I + +S+ELL++SGINF K+  +GID   F +L+M SG+++ DS+ W+T+H+ YD G+L+ +L   ++P+ + +F   +  Y P  YD+  + K                       L  LA+ L + R  I    G  SLL   +F     L  + F +  +  KY GV+YG+
Sbjct:  200 GTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPS---TWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29
Identity = 81/219 (36.99%), Postives = 112/219 (51.14%), Query Frame = 2
Query:   23 FKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS-MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVEN 670
            F SS +  Y+ +K NV+  KLIQ G T  +  G +         VW+ NF  F    D     SIE L++ G++  K  + G+D   +G       +  S   + +VTF   YDF Y L +L    LP+T  EF   +   F  VYD K +  FC  L  H GL+KLA+LL++ RVG  H AGSDSL+TA  F  LK  +  S   +  G++YG+G  N
Sbjct:   49 FDSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRFAR--GLIYGIGKSN 258          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 75/207 (36.23%), Postives = 108/207 (52.17%), Query Frame = 2
Query:   29 SSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS---MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE 631
            +S E  Y+ +K NVD   LIQLGLT   +       G  K   W+ N  +F+ ++ +  + SI  LK +G++  K  E GI    F    M    +L++    M WVTF   YD  YLLK LT + LP+T  EF   ++ +    VYD+K +   C+ L    GL ++A++L++ RVG  H AGSDS LTA  F  L  +  +S  E
Sbjct:   44 ASDEIRYRDMKFNVDNTHLIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLIFDLVNSRKE 238          
The following BLAST results are available for this feature:
BLAST of CX299939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_XENTR3.958e-6252.21CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT8_MOUSE5.169e-6252.07CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN5.169e-6252.07CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CAF1K_ARATH4.528e-5855.14Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH1.115e-5655.19Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1_SCHPO1.363e-5448.88Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_CAEEL8.858e-4644.39CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
POP2_YEAST1.370e-3837.18Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CAF1A_ARATH5.768e-2936.99Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH2.773e-2336.23Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC07004C03SK SaltLeaf1 Citrus clementina cDNA clone C07004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299939 ID=CX299939; Name=CX299939; organism=Citrus clementina; type=EST; length=740bp
GAATTCGGCACGAGGGGGCTCTTTCAAGAGCAGTTATGAATATCACTACC
AAACTTTGAAAAGCAATGTTGATATGTTAAAGCTCATCCAGTTGGGTCTG
ACATTTTCAGATGAGAATGGTAACTTGCCCACTTGTGGGACAGATAAATA
TTGTGTTTGGCAATTTAATTTTCGGGAGTTCGATGTTAATGAGGATATCT
TTGCCAATGATTCGATTGAGCTTTTGAAACAAAGTGGGATTAATTTTACA
AAAAATAATGAGATAGGTATTGATGCAATGAGATTTGGTGAGTTAATGAT
GTCATCTGGGATTGTTTTGAGTGATAGCATGCATTGGGTGACATTTCATA
GTGGGTATGATTTTGGGTATTTGCTAAAGCTTTTGACGTGCCAGAATCTG
CCTGATACGCAAGTGGAGTTCTTTAATTTGATCAGAATTTATTTTCCGAC
CGTGTATGATATCAAGCACTTGATGAAGTTTTGTAATAGCCTTCATGGAG
GATTGAACAAACTTGCTGAGTTGTTGGAAGTTGAAAGAGTTGGGATTTGT
CATCAAGCAGGTTCAGATAGTTTGCTTACAGCTAGTACATTCCGAANATT
GAAAGANAACTTCTTTAGCAGCTCTTTGGAAAAATATGCTGGTGTCTTAT
ATGGTTTAGGCGTTGAGAATGGACAAATACTCATTGAAAGAGGGGGAAAA
AGGGAGTTTAGAAGCTGTTTATTTATGTGTAGTGTGCGTG
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