CX299939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.958e-62 Identity = 118/226 (52.21%), Postives = 162/226 (71.68%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE++R+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 5.169e-62 Identity = 113/217 (52.07%), Postives = 163/217 (75.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG 661 G F+SS +Y YQ L+ NVD+LK+IQLGLTF++E G P+ G + WQFNF+ F++ ED+++ DSI+LL SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +K FF S++ KY G LYGLG Sbjct: 52 GEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 5.169e-62 Identity = 113/217 (52.07%), Postives = 163/217 (75.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG 661 G F+SS +Y YQ L+ NVD+LK+IQLGLTF++E G P+ G + WQFNF+ F++ ED+++ DSI+LL SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F +K FF S++ KY G LYGLG Sbjct: 52 GEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.528e-58 Identity = 118/214 (55.14%), Postives = 152/214 (71.03%), Query Frame = 2 Query: 41 YHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFCNS-LHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRXLKXNFF-SSSLEKYAGVLYGLGV 664 Y Y LKSNVD L LIQ+GLT SD +GNLP G K +W+FNFR+FDV D A DSIELL++ GI+F +N G+++ RF ELMMSSG++ ++S+ WVTFHS YDFGYL+K+LT + LP EF L+R +F VYD+KH+M+FC L+GGL+++A LEV R VG CHQAGSDSLLT F+ ++ +F EK+AGVLYGL V Sbjct: 64 YLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.115e-56 Identity = 117/212 (55.19%), Postives = 150/212 (70.75%), Query Frame = 2 Query: 47 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRXLKXNFF-SSSLEKYAGVLYGLGV 664 Y LK+NVD L LIQ+GLT SD NGNLP G D + +W+FNFR+FDV D A DSIELL++ GI+F +N G+++ RF ELMMSSG+V ++ + WVTFHS YDFGYL+K+LT + LP EF ++R+ F VYD+KH+MKFC L GGL+++A LEV R VG CHQAGSDSLLT F+ ++ +F EK+AGVLYGL V Sbjct: 68 YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.363e-54 Identity = 109/223 (48.88%), Postives = 152/223 (68.16%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE-KYAGVLYGLGVENGQIL 682 G FKSS +YHYQTL++NVD LK+IQ+GL SDE GN P + C WQFNF F++ +D++A +SIELL +SGI+F K+ E+GI+ F EL++ SG+VL + + W+TFHSGYDF YLLK +T LP EF+ ++ IYFP YDIK++MK + GL +A+ L++ R+G HQAGSD+LLTA F ++ +F S++ + LYGLG G +L Sbjct: 62 GVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGLG-STGSVL 278
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.858e-46 Identity = 99/223 (44.39%), Postives = 144/223 (64.57%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCN----SLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYA----GVLYGLG 661 G+F+S +++YQ + NV+MLKLIQ+G ++ G LP G VWQFNF F ED+F+++S+E+L+Q+GI+FT GI FGEL+ +SG++ + W+TF SGYDFGYLLK +T +LP + FF + FPT +DIK L++ N L GGL ++A+ L+V+R G+ HQAGSD+LLTA+TF +K FF + + A G ++GLG Sbjct: 63 GTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGLG 280
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 1.370e-38 Identity = 87/234 (37.18%), Postives = 131/234 (55.98%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGICHQAGSDSLLTASTF---RXLKXNFFSSSLE--KYAGVLYGL 658 G+F+S +YHYQT+++NVD L IQLGL+ SD NGN P G WQFNF EFD ++I + +S+ELL++SGINF K+ +GID F +L+M SG+++ DS+ W+T+H+ YD G+L+ +L ++P+ + +F + Y P YD+ + K L LA+ L + R I G SLL +F L + F + + KY GV+YG+ Sbjct: 200 GTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPS---TWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29 Identity = 81/219 (36.99%), Postives = 112/219 (51.14%), Query Frame = 2 Query: 23 FKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS-MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVEN 670 F SS + Y+ +K NV+ KLIQ G T + G + VW+ NF F D SIE L++ G++ K + G+D +G + S + +VTF YDF Y L +L LP+T EF + F VYD K + FC L H GL+KLA+LL++ RVG H AGSDSL+TA F LK + S + G++YG+G N Sbjct: 49 FDSSSDECYRAMKGNVENTKLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRFAR--GLIYGIGKSN 258
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23 Identity = 75/207 (36.23%), Postives = 108/207 (52.17%), Query Frame = 2 Query: 29 SSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS---MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE 631 +S E Y+ +K NVD LIQLGLT + G K W+ N +F+ ++ + + SI LK +G++ K E GI F M +L++ M WVTF YD YLLK LT + LP+T EF ++ + VYD+K + C+ L GL ++A++L++ RVG H AGSDS LTA F L + +S E Sbjct: 44 ASDEIRYRDMKFNVDNTHLIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLIFDLVNSRKE 238 The following BLAST results are available for this feature:
BLAST of CX299939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299939 ID=CX299939; Name=CX299939; organism=Citrus clementina; type=EST; length=740bpback to top |