CX299939

Overview
NameCX299939
Unique NameCX299939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 70/202 (34.65%), Postives = 102/202 (50.50%), Query Frame = 2
Query:   29 SSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSS 622
            +S E  Y+ +K NVD   LIQLG T  D  G   T        W+ N  +FD ++    + SI  LK +G+N  K  E GI    F              + WV F   YD  YL+K LT  + LP+T+ EF   ++ +    V+D+K + + C+ L    GL ++A++L+++RVG  H AGSDS LTA  F  L  +  +S
Sbjct:   48 ASEEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAKT--------WEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNS 241          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 71/187 (37.97%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   38 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTF 592
            E  Y  +  +VD  KLIQLGLT  D NG +   GT     W+ NF +F V +D     SIE L+++G++  K  E GI    F   M         ++ WVTFH  YD  YLLK  T + LP T   F   +     +VYD+K +   C  L    GL  LA    + RVG  H AGS++ LTA  F
Sbjct:   34 EERYMDMSFSVDRAKLIQLGLTLFDINGRIG--GT-----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVF 212          
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 69/202 (34.16%), Postives = 102/202 (50.50%), Query Frame = 2
Query:   29 SSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNLI-RIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSS 622
            +S E  Y+ +K NVD   LIQLG T  D  G   T        W+ N  +F+ ++    + SI  LK +G+N  K  E GI    F              + WV F   YD  YL+K LT  + LP+T+ EF   + ++    V+D+K + + C+ L    GL ++A++L+++RVG  H AGSDS LTA  F  L  +  +S
Sbjct:   43 ASEEIRYRDMKFNVDNTHLIQLGFTLFDRRGITKT--------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNS 236          
The following BLAST results are available for this feature:
BLAST of CX299939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1C_ARATH3.066e-2234.65Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1H_ARATH1.522e-2137.97Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1D_ARATH1.522e-2134.16Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC07004C03SK SaltLeaf1 Citrus clementina cDNA clone C07004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299939 ID=CX299939; Name=CX299939; organism=Citrus clementina; type=EST; length=740bp
GAATTCGGCACGAGGGGGCTCTTTCAAGAGCAGTTATGAATATCACTACC
AAACTTTGAAAAGCAATGTTGATATGTTAAAGCTCATCCAGTTGGGTCTG
ACATTTTCAGATGAGAATGGTAACTTGCCCACTTGTGGGACAGATAAATA
TTGTGTTTGGCAATTTAATTTTCGGGAGTTCGATGTTAATGAGGATATCT
TTGCCAATGATTCGATTGAGCTTTTGAAACAAAGTGGGATTAATTTTACA
AAAAATAATGAGATAGGTATTGATGCAATGAGATTTGGTGAGTTAATGAT
GTCATCTGGGATTGTTTTGAGTGATAGCATGCATTGGGTGACATTTCATA
GTGGGTATGATTTTGGGTATTTGCTAAAGCTTTTGACGTGCCAGAATCTG
CCTGATACGCAAGTGGAGTTCTTTAATTTGATCAGAATTTATTTTCCGAC
CGTGTATGATATCAAGCACTTGATGAAGTTTTGTAATAGCCTTCATGGAG
GATTGAACAAACTTGCTGAGTTGTTGGAAGTTGAAAGAGTTGGGATTTGT
CATCAAGCAGGTTCAGATAGTTTGCTTACAGCTAGTACATTCCGAANATT
GAAAGANAACTTCTTTAGCAGCTCTTTGGAAAAATATGCTGGTGTCTTAT
ATGGTTTAGGCGTTGAGAATGGACAAATACTCATTGAAAGAGGGGGAAAA
AGGGAGTTTAGAAGCTGTTTATTTATGTGTAGTGTGCGTG
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