CX299962

Overview
NameCX299962
Unique NameCX299962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 41/126 (32.54%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   44 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS-ARGGTAIKVM 415
            QD+A+ V+K+    G   DV F+C+G +  +  A+  T+ GG +  VGMG      P+   + +E+ ++G FRY    +   +  + +GK++VKPLITH+F F  ++  +A++ + A GG  +K +
Sbjct:  231 QDLADGVQKLLG--GNHADVVFECSGADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNLVATGKVNVKPLITHKFKF--EDAAKAYDYNIAHGGEVVKTI 352          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 41/126 (32.54%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   44 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS-ARGGTAIKVM 415
            QD+A+ V+K+    G   DV F+C+G +  +  A+  T+ GG +  VGMG      P+   + +E+ ++G FRY    +   +  + +GK++VKPLITH+F F  ++  +A++ + A GG  +K +
Sbjct:  231 QDLADGVQKLLG--GNHADVVFECSGADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNLVATGKVNVKPLITHKFKF--EDAAKAYDYNIAHGGEVVKTI 352          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 2
Query:    2 ELGADNIVKVSTNLQDIAEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA 388
            + GA +IV  S +L         I+KA+G  G DV F+C+G    +   +   +AGG +  VGMG  E+  P++    +E+   G FRY +  +   +E + S K+ +KP ITHR+ F  K+  EAFE ++
Sbjct:  214 QFGATHIVN-SGDLPHGVTVDSVIKKAIGKKGADVVFECSGAEPCVRAGIEVCKAGGTIVQVGMGQEEIQFPISIIPTKELTFQGCFRYCQGDYSDSIELVSSRKLSLKPFITHRYSF--KDAVEAFEETS 341          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   92 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 394
            G D+ F+ +G  K  +      R GG V LVG+    + + +  A ++EV +  VFRY N +   L+ + SGK+D+KPLIT  + F+  +  +AFE +A+G
Sbjct:  234 GADIVFEASGSPKAFADLFDVVRPGGAVVLVGLPVEPVALNVPAAISKEVRIETVFRYANIFDRALQLIASGKVDLKPLITGTYDFA--DSIKAFERAAQG 332          
The following BLAST results are available for this feature:
BLAST of CX299962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DHSO2_YEAST4.664e-1332.54Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]
DHSO1_YEAST4.664e-1332.54Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
XYL2_YEAST6.735e-1234.35D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
XYLD_RHILO9.726e-1135.64Putative D-xylulose reductase OS=Rhizobium loti GN... [more]

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Properties
Property NameValue
Genbank descriptionC07004E04SK SaltLeaf1 Citrus clementina cDNA clone C07004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299962 ID=CX299962; Name=CX299962; organism=Citrus clementina; type=EST; length=572bp
GGAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGACA
TAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGAT
GTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTCAACAGCACTGAG
TGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGATGGGTCATCTTG
AAATGACTGTCCCACTCACTCCGGCTGCTGCAAGGGAGGTGGATGTGGTG
GGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCTGGAGTTCCTTAG
AAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATAGGTTTGGTTTCT
CCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCTCGTGGTGGTACT
GCAATCAAGGTCATGTTTAATCTGTAAAATACAACGTAAAGTAAACGTTT
GGGCAAAAGATGAAATAAAATGGAATTGTCGCCGAGTAATATGAATCAAA
GTGTAGCATATTACTTTATTTCTATCTATTACAAAATAAAATTCAGATTT
CTCAAAAAAAAAAAAAAAAAAA
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