CX299976

Overview
NameCX299976
Unique NameCX299976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_CHRSD (Flavoprotein wrbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=wrbA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G PTR+G MA+QM+ F+D TG LW +GKL+GK  G F S             +  T L HHGM  V + Y+  A + ++D + GG+PYGA   A GDG+R+PSE EL +A  QG+++A +  KL
Sbjct:   72 DAIVVGTPTRFGNMASQMRNFWDKTGGLWAQGKLIGKLGGAFTSTASQHGGQETTLTSIHTTLLHHGMAVVGVPYSCPA-LTELDEVSGGTPYGATTIAGGDGSRQPSENELTIARFQGQHIAEMAAKL 199          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BRASO (Flavoprotein wrbA OS=Bradyrhizobium sp. (strain ORS278) GN=wrbA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 59/129 (45.74%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAG-VFAGDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G  TR+G MA+QM  F D  G LW +G L GK  G F S            +T IT L H GM  V + Y F AG  K+D + GGSPYGA  +  GDG+R+PSE ELA A +QG+ +A   KKL
Sbjct:   70 DAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFTIITNLLHFGMTIVGLNYGF-AGQMKLDEVTGGSPYGATTITGGDGSRQPSENELAGARYQGRVIAETAKKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_METPB (Flavoprotein wrbA OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=wrbA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTRYG MA+QMK F D TG LW +G LVGK    F S             +  T + HHGM+ V + Y+F AG   ++ ++G SPYGA   A GDG+R+PS+ EL  A  QG+++A +  KL
Sbjct:   70 DAIIFGTPTRYGNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVMFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSQVELDGARFQGRHVAGIAAKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BURVG (Flavoprotein wrbA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=wrbA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V + Y   +G+  M  I GG+PYGA   AG DG+R+PS  EL +A +QGK++A +  KL
Sbjct:   71 DAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVDMKEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAQLAAKL 198          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BURS3 (Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V + Y   +G+  M+ I GG+PYGA   AG DG+R+PS  EL +A +QGK +A +  KL
Sbjct:   71 DAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKRVAELASKL 198          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_METS4 (Flavoprotein wrbA OS=Methylobacterium sp. (strain 4-46) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTRYG MA+QMK F D TG LW +G LVGK    F S             +  T L HHGM+ V + Y F  G   +  + G SPYGA   A GDG+R+PS  EL  A +QG+++A +  KL
Sbjct:   70 DAIIFGTPTRYGNMASQMKNFLDQTGGLWMKGALVGKVGSVFTSSASQHGGQESTILSFHTVLLHHGMVLVGLPYAF-QGQLGVSQVMGNSPYGASTIADGDGSRQPSPIELDGARYQGRHVAGIAAKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_METRJ (Flavoprotein wrbA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTRYG MA+QMK F D TG LW +G LVGK    F S             +  T L HHGM+ V + Y+F  G   +++++G +PYGA   A GDG+R+PS  EL  A  QG+++A +  KL
Sbjct:   70 DAIIFGTPTRYGNMASQMKQFIDQTGGLWMKGALVGKVGSVFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-QGQAGVEAVKGNTPYGASTIADGDGSRQPSAVELEGARFQGRHVAGIAAKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_MESSB (Flavoprotein wrbA OS=Mesorhizobium sp. (strain BNC1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            DGF+FG  TRYG M++Q+K F D TG LW  GKLV KPA   VS             +    L HHGM+ VP+ Y +  G    D++RGG+PYG    +  DG+R PS  EL  A  QGK +A +  KL
Sbjct:   70 DGFIFGVSTRYGMMSSQLKNFLDQTGPLWAAGKLVNKPATVMVSTATQHGGAEIALASTQLALQHHGMIIVPLSYAY-QGQSGNDTVRGGAPYGMTTTSDTDGSRMPSAQELEGARFQGKRLAEITAKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BRASB (Flavoprotein wrbA OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=wrbA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 59/129 (45.74%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAG-VFAGDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G  TR+G MA+QM  F D  G LW  G L GK  G F S            +T IT L H GM  V + Y F AG  K+D + GGSPYGA  +  GDG+R PSE ELA A +QG+ +A   KKL
Sbjct:   70 DAIIVGTGTRFGRMASQMANFLDQAGGLWARGALNGKVGGAFTSTATQHGGQETTLFTIITNLLHFGMTIVGLNYGF-AGQMKLDEVTGGSPYGATTITGGDGSRLPSENELAGARYQGRVIAETAKKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BURA4 (Flavoprotein wrbA OS=Burkholderia ambifaria (strain MC40-6) GN=wrbA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L H GM+ V + Y   +G+  M  I GG+PYGA   AG DG+R+PS  EL +A +QGK++A +  KL
Sbjct:   71 DAIIFGTPTRFGNMAGQMRTFLDQTGCLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
The following BLAST results are available for this feature:
BLAST of CX299976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_CHRSD1.193e-2243.41Flavoprotein wrbA OS=Chromohalobacter salexigens (... [more]
WRBA_BRASO1.193e-2245.74Flavoprotein wrbA OS=Bradyrhizobium sp. (strain OR... [more]
WRBA_METPB2.036e-2244.19Flavoprotein wrbA OS=Methylobacterium populi (stra... [more]
WRBA_BURVG2.036e-2244.19Flavoprotein wrbA OS=Burkholderia vietnamiensis (s... [more]
WRBA_BURS32.036e-2244.19Flavoprotein wrbA OS=Burkholderia sp. (strain 383)... [more]
WRBA_METS44.535e-2244.19Flavoprotein wrbA OS=Methylobacterium sp. (strain ... [more]
WRBA_METRJ4.535e-2243.41Flavoprotein wrbA OS=Methylobacterium radiotoleran... [more]
WRBA_MESSB5.923e-2244.19Flavoprotein wrbA OS=Mesorhizobium sp. (strain BNC... [more]
WRBA_BRASB5.923e-2245.74Flavoprotein wrbA OS=Bradyrhizobium sp. (strain BT... [more]
WRBA_BURA47.736e-2243.41Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]

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Properties
Property NameValue
Genbank descriptionC07004F06SK SaltLeaf1 Citrus clementina cDNA clone C07004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299976 ID=CX299976; Name=CX299976; organism=Citrus clementina; type=EST; length=683bp
AATTCGGCACGAGGGACGGGTTCTTGTTTGGGTTTCCGACGAGGTATGGG
TGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATGTTGTG
GAAAGAGGGTAAACTTGTCGGCAAACCCGCCGGTTTTTTTGTCAGCACTG
GCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTACCCAG
TTGGCCCACCATGGAATGCTATTTGTTCCTATTGGGTACACCTTTGGAGC
CGGTATGTTCAAGATGGACTCTATTCGGGGGGGCTCTCCATATGGTGCTG
GTGTTTTCGCTGGTGATGGCACAAGAGAGCCAAGTGAAACAGAGCTGGCA
CTAGCAGAACATCAGGGCAAGTATATGGCAGCGGTAGTCAAAAAGCTTTG
CGAGGCTTAATCTTTTATGTCATTGTTCAGACCACATCGTTGTGATTGGA
GTTGTGTTTGCTTTGTGATTGAATTTGGCGTTTTATGTGTTGCCGTCATC
CATTCTTTCTTTCCACAATTCATTCTGTTGAAAAGATGTAAATGATATGA
AATTCTTCCATTATGCCTCCACAAATAAATCTGTGAGTCAGCGAGATGTT
TCTTTGTAAATCTTTATTTCTTAACGTGTAATTTATCAGTATTTTGATGT
AATAAATTTCTTTCTTGTCAAAAAAAAAAAAAA
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