CX299976

Overview
NameCX299976
Unique NameCX299976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_RHORT (Flavoprotein wrbA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=wrbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 58/129 (44.96%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            DG L G PTR+G MA QM+ F D TG LW +GKLVGK  G F S             +  T   HHGM+ V + Y     MF     R G PYGA   A GDG+R+PS+ E  +A  QG++ A V KKL
Sbjct:   74 DGILIGTPTRFGNMAGQMRNFLDQTGGLWAKGKLVGKAGGAFTSTATGGGAETTLL-SVYTNFLHHGMVVVGVPYG-TPEMFDTSEARAGGPYGAATLAGGDGSRQPSDKERTIARFQGRHFAGVAKKL 200          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BURCM (Flavoprotein wrbA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=wrbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L H GM+ V + Y   +G+  M  I GG+PYGA   AG DG+R+PS  EL +A +QGK++A +  KL
Sbjct:   71 DAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_ACICJ (Flavoprotein wrbA OS=Acidiphilium cryptum (strain JF-5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M  QM+ F D TG LW +G L+GK    F S             +  T L HHGM+ V + Y+    +  M+ I GG+PYGA   AG DG+R+PS  ELA+A  QGK++A +  KL
Sbjct:   70 DAIIFGTPTRFGNMCGQMRNFLDQTGGLWAKGALIGKVGSVFASTGTQHGGQETTITSFHTTLFHHGMIVVGVPYS-NPELTNMNEITGGTPYGATTLAGADGSRQPSANELAIARAQGKHVAGIAAKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_CAUCR (Flavoprotein wrbA OS=Caulobacter crescentus GN=wrbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 58/129 (44.96%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G PTR+G MA+QM AFFD+ G LW  G L GK AG F S            ++ IT + H G   V + Y   AG   +D I GGSPYGA   AG DG+R+PSE EL  A +QG+ +A    KL
Sbjct:   70 DAIIVGAPTRFGRMASQMAAFFDAAGGLWARGALHGKVAGAFTSTATQHGGQETTLFSIITNMLHFGTTIVGLDYGH-AGQMTLDEITGGSPYGATTIAGGDGSRQPSENELTGARYQGRKIAETAIKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_CAUCN (Flavoprotein wrbA OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=wrbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 58/129 (44.96%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G PTR+G MA+QM AFFD+ G LW  G L GK AG F S            ++ IT + H G   V + Y   AG   +D I GGSPYGA   AG DG+R+PSE EL  A +QG+ +A    KL
Sbjct:   70 DAIIVGAPTRFGRMASQMAAFFDAAGGLWARGALHGKVAGAFTSTATQHGGQETTLFSIITNMLHFGTTIVGLDYGH-AGQMTLDEITGGSPYGATTIAGGDGSRQPSENELTGARYQGRKIAETAIKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_BURPP (Flavoprotein wrbA OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=wrbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  + L H GM+ V + Y+  AG+  M  I GG+PYGA   AG DG+R+PS+ EL +A  QGK++A++  K+
Sbjct:   71 DAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHSTLLHQGMVIVGVPYSC-AGLVNMTEITGGTPYGATTLAGADGSRQPSQNELDIARFQGKHVASLALKI 198          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA1_RHIME (Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAG-VFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 404
            D  +FG  TRYG +A+Q++ F D TG LW +GKLVGK    F S               I  + HHGM+ V + Y F  G   ++ ++GGSPYGA  +  GDG+R+PS  EL  A  QG ++A +  KL +
Sbjct:   70 DAIIFGAGTRYGTVASQLRNFIDQTGGLWAKGKLVGKVGSAFTSSATQHGGQESTILGLIPTMMHHGMVVVGLPYAF-QGQMGVEEVKGGSPYGASTITGGDGSRQPSAVELEAARFQGAHVARIAAKLAD 199          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPT (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain TIE-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 57/129 (44.19%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGA-GVFAGDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G  TR+G MA+QM  F D  G LW  G L GK  G F S            ++ IT L H GM+ V + Y FG  M ++D + GG+PYGA  +  GDG+R+PSETELA A +QGK +A    KL
Sbjct:   70 DAIVIGTGTRFGRMASQMSNFLDQAGGLWARGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGFGDQM-RLDQVTGGAPYGATTITGGDGSRQPSETELAGARYQGKTIAETAIKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPA (Flavoprotein wrbA OS=Rhodopseudomonas palustris GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 57/129 (44.19%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGA-GVFAGDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  + G  TR+G MA+QM  F D  G LW  G L GK  G F S            ++ IT L H GM+ V + Y FG  M ++D + GG+PYGA  +  GDG+R+PSETELA A +QGK +A    KL
Sbjct:   70 DAIVIGTGTRFGRMASQMSNFLDQAGGLWARGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGFGDQM-RLDQVTGGAPYGATTITGGDGSRQPSETELAGARYQGKTIAETAIKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_GEOUR (Flavoprotein wrbA OS=Geobacter uraniireducens (strain Rf4) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 55/129 (42.64%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M  QM+ F D+TG LW +G LVGK    F S             +    L H GM+ V + Y F  G  + D I GGSPYGA   AG  G R PSE +LA A +QGK++A++  +L
Sbjct:   74 DAIIFGTPTRFGNMCGQMRQFLDATGGLWMKGSLVGKLGSVFTSSATQHGGQESTILSFHITLLHQGMVVVGLPYAF-QGQMRNDEIIGGSPYGASTIAGTQGERSPSENDLAAARYQGKHVASIAARL 201          
The following BLAST results are available for this feature:
BLAST of CX299976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_RHORT1.320e-2144.96Flavoprotein wrbA OS=Rhodospirillum rubrum (strain... [more]
WRBA_BURCM1.320e-2143.41Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]
WRBA_ACICJ1.320e-2142.64Flavoprotein wrbA OS=Acidiphilium cryptum (strain ... [more]
WRBA_CAUCR1.723e-2144.96Flavoprotein wrbA OS=Caulobacter crescentus GN=wrb... [more]
WRBA_CAUCN1.723e-2144.96Flavoprotein wrbA OS=Caulobacter crescentus (strai... [more]
WRBA_BURPP1.723e-2142.64Flavoprotein wrbA OS=Burkholderia phytofirmans (st... [more]
WRBA1_RHIME2.940e-2140.46Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1... [more]
WRBA_RHOPT3.839e-2144.19Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHOPA3.839e-2144.19Flavoprotein wrbA OS=Rhodopseudomonas palustris GN... [more]
WRBA_GEOUR3.839e-2142.64Flavoprotein wrbA OS=Geobacter uraniireducens (str... [more]

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Properties
Property NameValue
Genbank descriptionC07004F06SK SaltLeaf1 Citrus clementina cDNA clone C07004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299976 ID=CX299976; Name=CX299976; organism=Citrus clementina; type=EST; length=683bp
AATTCGGCACGAGGGACGGGTTCTTGTTTGGGTTTCCGACGAGGTATGGG
TGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATGTTGTG
GAAAGAGGGTAAACTTGTCGGCAAACCCGCCGGTTTTTTTGTCAGCACTG
GCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTACCCAG
TTGGCCCACCATGGAATGCTATTTGTTCCTATTGGGTACACCTTTGGAGC
CGGTATGTTCAAGATGGACTCTATTCGGGGGGGCTCTCCATATGGTGCTG
GTGTTTTCGCTGGTGATGGCACAAGAGAGCCAAGTGAAACAGAGCTGGCA
CTAGCAGAACATCAGGGCAAGTATATGGCAGCGGTAGTCAAAAAGCTTTG
CGAGGCTTAATCTTTTATGTCATTGTTCAGACCACATCGTTGTGATTGGA
GTTGTGTTTGCTTTGTGATTGAATTTGGCGTTTTATGTGTTGCCGTCATC
CATTCTTTCTTTCCACAATTCATTCTGTTGAAAAGATGTAAATGATATGA
AATTCTTCCATTATGCCTCCACAAATAAATCTGTGAGTCAGCGAGATGTT
TCTTTGTAAATCTTTATTTCTTAACGTGTAATTTATCAGTATTTTGATGT
AATAAATTTCTTTCTTGTCAAAAAAAAAAAAAA
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