CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 43/128 (33.59%), Postives = 60/128 (46.88%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P ST                  G+A RVPTPN           K    +++    + +A+  LKGIL   ++ +VS DF                + D+ VK+++WYDNE+GYS RVVDL
Sbjct:  198 RGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDL 325          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 42/133 (31.58%), Postives = 63/133 (47.37%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+A+RVPT N           K    +E+  A +E+++  L GIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  199 RTAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R    NI+P+ST                  G+A RVPTP+          + +T  E++ A  + +AD+ +KGI+   ++ +VS DF                +     K++AWYDNEWGYS RVVDL
Sbjct:  200 RGRGRNIIPSSTGAAKAVGKVMPELNGKLTGMAFRVPTPDVSVVDLTVRLASETTYEDIKATMKAAADDSMKGIMKYTEDAVVSTDFIHDDASCIFDASAGIMLNSKFCKLVAWYDNEWGYSNRVVDL 327          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 43/133 (32.33%), Postives = 62/133 (46.62%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R    NI+P+ST                  G+++RVPT +           K    E++    R++A+ E KGI++  DE +VS DF                +  + VK+IAWYDNEWGYS+RV +L   VA
Sbjct:  198 RGVGNNIIPSSTGAAKAVGKVIPSLNGKLTGLSMRVPTQDVSVVDLVVRLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVA 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.341e-14
Identity = 44/134 (32.84%), Postives = 62/134 (46.27%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R A  NI+P+ST                  G+A RVPTP+           K    EE+    ++++   ELKGIL+  D+ +VS DF                +  + VK+++WYDNEWGYS RV DL   +A
Sbjct:  199 RGAGANIIPSSTGAAKAVGKVIPSLNGKLTGMAFRVPTPDVSVVDLVVRIEKGASYEEIKETIKKASQTPELKGILNYTDDQVVSTDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.752e-14
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = 3
Query:    6 ARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 395
            ARAAA +I+ T+                  NG+A+RV T N          +K+   EEVNAA +  A+ ELKGIL+   EPLV  ++                +   MVKV++WYDNE GYS RVV LA
Sbjct:  199 ARAAAESIIDTTNGAAMAVALVLPELKGKLNGMAMRVATANVSVVDLVYELAKEVTVEEVNAALKAIAEGELKGILAYSIEPLVIRNYNGSTVSSTIDILSTMVIDGAMVKVVSWYDNETGYSHRVVALA 328          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.752e-14
Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            RAAA+NI+P++T                  G++ RVPTP+          ++ T  +E++ A +++A   +KGIL   DE LVS DF    R                     KV++WYDNEW YS RVVDL   +A
Sbjct:  216 RAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMA 352          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 42/128 (32.81%), Postives = 60/128 (46.88%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P ST                  G+A RVPTPN           K    +++    + +++  LKGIL   ++ +VS DF                + D+ VK+++WYDNE+GYS RVVDL
Sbjct:  198 RGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDL 325          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 42/133 (31.58%), Postives = 62/133 (46.62%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+++RVPT N           K    +E+  A + +AD  L GIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  199 RTAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMSMRVPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 410
            RARAAA+NIVPTST                 +G ALRVP               +   E +NAA +E+A  E    L+  +EPLVS D                  G+  VKV++WYDNEWGY+ +++ L ++VA+
Sbjct:  198 RARAAAVNIVPTSTGAAKAVALVLPELKGKLDGYALRVPVITGSATDLTFNTKSEVTVESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGLTKVSGNT-VKVVSWYDNEWGYTCQLLRLTELVAS 332          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P_COTJA1.027e-1433.59Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COCHE1.027e-1431.58Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3PC_CHOCR1.027e-1432.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_AGABI1.027e-1432.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_PHARH1.341e-1432.84Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_BACCO1.752e-1437.69Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PG_LEIME1.752e-1433.58Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_TRISI2.288e-1432.81Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_PHANO2.288e-1431.58Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CORGL2.288e-1435.29Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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