CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            R AA NI+P+ST                  G+A RVPT N           K    E + AA +E+++ ELKGIL   ++ +VS D                 + D+ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  199 RGAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 407
            RAAA NI+P+ST                  G+++RVPT N           K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  199 RAAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 51/131 (38.93%), Postives = 66/131 (50.38%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 395
            RAR+   +I+PTST                 +G+ALRVPT N           +     +VN AF+ +   +L G+L V + PLVSVDF                MG + VKVIAWYDNEWGYS RVV++A
Sbjct:  198 RARSCNESIIPTSTGAAKALKEVLPEVEGKLHGMALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVA 325          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P+ST                  G+A RVPTP+          +K T  +E+ AA +++++  L GIL   DE +VS DF+               +  +  KV+AWYDNEWGYS RVVDL
Sbjct:  203 RGAAQNIIPSSTGAAKAVALVLPELKGKLTGMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDL 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P+ST                  G+A RVPTP+          +K T  +E+ AA +++++  L GIL   DE +VS DF+               +  +  KV+AWYDNEWGYS RVVDL
Sbjct:  203 RGAAQNIIPSSTGAAKAVALVLPELKGKLTGMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDL 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 395
            RAR A+ +++PTST                 +GI++RVPTP+           + T AEE+N+  + +AD  ++ G+L   DEPLVS DF                +   + +V+AWYDNEWG+S R+VD A
Sbjct:  199 RARTASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTA 330          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 51/137 (37.23%), Postives = 65/137 (47.45%), Query Frame = 3
Query:    3 RARAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 413
            RARAAALNIVPTS+                 +  ALRVP P            + T  EEV  A+  +A    KG+LS  D PLVS D                 +    VKV+ WYDNEWGYS R++DLA ++ ++
Sbjct:  198 RARAAALNIVPTSSGAAKAIGLVLPELAGRLDAFALRVPVPTGSVTDLTVTTRRGTSVEEVKEAYAAAASGPYKGLLSYVDAPLVSTDI--VGDPASLFDAGLTRVCGPQVKVVGWYDNEWGYSNRLIDLATLIGSS 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R AA NI+P+ST                  G+A+RVPT N           K T  +E+  A +++++NELKGIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RVVDL
Sbjct:  199 RTAAQNIIPSSTGAAKAVGKVIPTLNGKLTGMAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDL 326          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.432e-17
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A  NI+P+ST                  G+A RVPTP+           K    +E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL
Sbjct:  205 RGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDL 332          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.401e-17
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           KK   E++ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 329          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P_PODAN3.771e-1735.34Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_COCIM3.771e-1733.83Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P2_STAES3.771e-1738.93Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P1_ANAVT3.771e-1736.72Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP3.771e-1736.72Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_ZYMMO4.925e-1734.85Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_STRAE4.925e-1737.23Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_ASPNG4.925e-1735.16Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3PC_GINBI6.432e-1734.38Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA8.401e-1735.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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