CX300037

Overview
NameCX300037
Unique NameCX300037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 44/134 (32.84%), Postives = 64/134 (47.76%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 410
            R AA NI+P ST                  G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  198 RGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMAS 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           K+   E++ AA +E ++ ++KGIL   ++ +VS DF                +  + VK+++WYDNEWGYS RVVDL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDL 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 43/128 (33.59%), Postives = 61/128 (47.66%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           K    EE+  A + +++  LKGI+   +E LVS DF                + D  +K+++WYDNEWGYS RVVDL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDL 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 62/128 (48.44%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R+AA NI+P++T                  G+A RVPT +           K    + +  A +E+++ ++KGIL   ++ +VS DF                + D  VK++AWYDNEWGYS RVVDL
Sbjct:  204 RSAATNIIPSATGAAKAVGKVLPELNGKLTGMAFRVPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDL 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           K    + + +A + +++ +LKGI+   +E LVS DF                + D+ VK++AWYDNEWGYS RV+DL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDL 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           K    + + +A + +++ +LKGI+   +E LVS DF                + D+ VK++AWYDNEWGYS RV+DL
Sbjct:  202 RAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDL 329          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 43/128 (33.59%), Postives = 62/128 (48.44%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            RAA+ NI+P+ST                  G++ RVPT +           K    +E+  A +E ++ +LKGIL   ++ +VS DF                + D  VK+++WYDNEWGYS RVVDL
Sbjct:  204 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A+ NI+P+ST                  G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  198 RGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A+ NI+P+ST                  G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  198 RGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300037 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 RAAALNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 392
            R A+ NI+P+ST                  G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  198 RGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
The following BLAST results are available for this feature:
BLAST of CX300037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
G3P_MOUSE2.069e-1532.84Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_ATRNU2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PD_MAIZE2.069e-1533.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.069e-1533.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SHIFL2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI2.069e-1532.81Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]

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Properties
Property NameValue
Genbank descriptionC07005D01SK SaltLeaf1 Citrus clementina cDNA clone C07005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300037 ID=CX300037; Name=CX300037; organism=Citrus clementina; type=EST; length=555bp
GGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGCG
GCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACGG
CATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTCG
TTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGA
GAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCC
CCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATT
CATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATGG
TATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACAT
TGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTG
TAATCGGCACAACGATGTTCTTGTTTTTCATTTTTGGTTCCCCCATTTAT
TGTTCTGCGTCTTAAAATTTGTAGAATGTATAACACTATCTTATTATGGA
ACCTT
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