CX300039
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26 Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +II+ T QNPIQV+VDA+IN PRE+ TRI G+ +VD+SP RR++ A+ +T GAR +F N K I ECLADE+I AA SYA++K++E+ER+A A+R Sbjct: 114 KRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIAAASR 224
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.389e-25 Identity = 54/111 (48.65%), Postives = 78/111 (70.27%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +I++ T QNPIQV +DA++N+ PRE+ TRI G+ +VD+SP RR++ A+ +T GAR +F N K I ECLADEL+ AA SYA++K++E+ER+A A+R Sbjct: 114 KRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR 224
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25 Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A EII T +NPIQV+VDA+IN+GPRE+ R+ G+ +AVD S RRV+ A+ + GAR +AF++ ++IA+CLADE+I AA S S+A+ KK+E+ERVAK+ R Sbjct: 84 KEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEIIAAANNESRSFAVAKKEEVERVAKSAR 194
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 5.279e-25 Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +II+L T QNPIQV+V A+ NS PRE+ TRI G+V AVD+SP RR++ A+ + TGA++++F N K I E LA+E+I AA S S+AIK+K+EIER+A ++R Sbjct: 83 KLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR 193
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 9.004e-25 Identity = 53/111 (47.75%), Postives = 78/111 (70.27%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A ++I+ T +NP+QV +DA+IN+ PRE+ TRI G+ +VD+SP RR++ A+ +T GAR +F N K I ECLADE+I AA SYA++K++E+ER+A A+R Sbjct: 113 KRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIAAASR 223
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.006e-24 Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334 + A+ II T +NP+QV+VDA+ NSGPRE+ TRI G+ Q+VD+SP RR++ A + GA ESA +N KT+A+CLADELI A+K S+A+KKK+E ERVA++ R Sbjct: 77 EEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNKKTVAQCLADELIFASKADMQKSFAVKKKEEKERVAQSAR 188
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.422e-24 Identity = 52/111 (46.85%), Postives = 83/111 (74.77%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +II T QNP+Q++++A+ N+GPRE+ TR+ G+ ++VD+SP RRV++A+ + TGA ++F++ K+I CLADE++ AAK ++S+AI KK+EIERVA++ R Sbjct: 74 KDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQSAR 184
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.836e-24 Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +II L T QNPIQV+V A+ NS PRE+ TRI G+V AVD++P RRV+ A+ L GA+E++F N K I E LA+E+I AA S+AI+KK+EIER+A ++R Sbjct: 84 KTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPKPIEEALAEEIIAAASNDPKSFAIRKKEEIERIALSSR 194
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 9.955e-24 Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +IIH T +NPIQV+V A+ N+ PRE+ T I G+ +AVD SP RR++ A+ L+T GA++ AFRN K I ECLA+E+I AA+ + ++I++K+EIER+A+A R Sbjct: 87 KRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAEAAR 197
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23 Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334 + A+ II T +NP+QV+VDA+ NSGPRE+ TRI G+ Q+VD+SP RR++ A + GA +SA +N KT+A+CLADE+I A+K S+A++KK+E ERVA++ R Sbjct: 77 EEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188 The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bpback to top |