CX300039

Overview
NameCX300039
Unique NameCX300039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:  114 KRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIAAASR 224          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.389e-25
Identity = 54/111 (48.65%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADEL+ AA     SYA++K++E+ER+A A+R
Sbjct:  114 KRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR 224          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25
Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A EII   T +NPIQV+VDA+IN+GPRE+  R+   G+   +AVD S  RRV+ A+  +  GAR +AF++ ++IA+CLADE+I AA   S S+A+ KK+E+ERVAK+ R
Sbjct:   84 KEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEIIAAANNESRSFAVAKKEEVERVAKSAR 194          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.279e-25
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F N K I E LA+E+I AA   S S+AIK+K+EIER+A ++R
Sbjct:   83 KLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR 193          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.004e-25
Identity = 53/111 (47.75%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:  113 KRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIAAASR 223          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.006e-24
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334
            + A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA ESA +N KT+A+CLADELI A+K     S+A+KKK+E ERVA++ R
Sbjct:   77 EEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNKKTVAQCLADELIFASKADMQKSFAVKKKEEKERVAQSAR 188          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.422e-24
Identity = 52/111 (46.85%), Postives = 83/111 (74.77%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  CLADE++ AAK  ++S+AI KK+EIERVA++ R
Sbjct:   74 KDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQSAR 184          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.836e-24
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F N K I E LA+E+I AA     S+AI+KK+EIER+A ++R
Sbjct:   84 KTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPKPIEEALAEEIIAAASNDPKSFAIRKKEEIERIALSSR 194          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.955e-24
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ L+T GA++ AFRN K I ECLA+E+I AA+  +  ++I++K+EIER+A+A R
Sbjct:   87 KRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAEAAR 197          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334
            + A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:   77 EEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRIL6.236e-2651.3530S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_THENV1.389e-2548.6530S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_ARCFU3.095e-2551.3530S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_SULSO5.279e-2552.2530S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_PYRAE9.004e-2547.7530S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_METMP2.006e-2451.7930S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_THEVO3.422e-2446.8530S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_SULTO5.836e-2452.2530S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_METKA9.955e-2449.5530S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_METM71.698e-2349.1130S ribosomal protein S7P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC07005D05SK SaltLeaf1 Citrus clementina cDNA clone C07005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bp
TAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAACCCAATTC
AAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACC
CGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCC
ATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTG
AATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAA
CTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCAAGAAGAA
GGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGTGATAGTG
GAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAACTTTTG
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