CX300039
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23 Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334 + A+ II T +NP+QV+VDA+ NSGPRE+ TRI G+ Q+VD+SP RR++ A + GA +SA +N KT+A+CLADE+I A+K S+A++KK+E ERVA++ R Sbjct: 77 EEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23 Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334 + A+ II T +NP+QV+VDA+ NSGPRE+ TRI G+ Q+VD+SP RR++ A + GA +SA +N KT+A+CLADE+I A+K S+A++KK+E ERVA++ R Sbjct: 77 EEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.218e-23 Identity = 50/111 (45.05%), Postives = 81/111 (72.97%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 + A +II T QNP+Q++++A+ N+GPRE+ TR+ G+ ++VD+SP RRV++A+ + TGA ++F++ K+I CLADE++ AA+ S+AI KK+EIERVA++ R Sbjct: 74 EEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQSAR 184
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.897e-23 Identity = 54/107 (50.47%), Postives = 80/107 (74.77%), Query Frame = 2 Query: 8 AMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 328 A+EII+ T QNP+QV+V AV N+ PRE+ TRI G+ + AVDI+P RRV+ ++ +T GA +SAF+N K+ A+CLADE++ A+ S S+A++KK+E ERVA++ Sbjct: 79 ALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQCLADEILLASDEDSRSFAVQKKEEKERVARS 185
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 3.783e-23 Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI G+ +VD++PLRR++ A+ LT GAR AF + I E LA+E++ AA SYAI+KK+EIER+A ++R Sbjct: 88 KKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEEIVLAASNDPKSYAIQKKEEIERIALSSR 198
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23 Identity = 54/111 (48.65%), Postives = 80/111 (72.07%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A EII+L T +NP++V+V AV NS P ED TRI G V +VD+SPLRRV+ A+ + G +E+AFR K++ E LA+ LI AA ++++ ++KKK+E+ER+A+A+R Sbjct: 89 KTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKSLEEFLAEHLILAANNTTDAPSVKKKNELERIAQASR 199
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METVS (30S ribosomal protein S7P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps7p PE=3 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 6.453e-23 Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334 + A+ I+ T +NPIQV+VDA+ NSGPRE+ TRI G+ Q+VD+SP RR++ A ++ GA + A ++ K+IA+CLADEL+ A+K S+A+KKK+E ERVA++ R Sbjct: 83 EEALTIVENRTKENPIQVVVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVAQSAR 194
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.453e-23 Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 334 ++A EII T QNPIQV+VDA+ N+GPRED TRI G+V Q+VD S LRR++ A+ + GA +A ++ K I E LA+E+I AA+G SYA++KK+E ERVA++ R Sbjct: 80 ENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAARGDMQKSYAVRKKEETERVAQSAR 191
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.428e-23 Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K +II + T QNPIQV+V A+ N+ PRE+ TRI G+V AVD++P RRV+ A+ L TGA E++F N K I E LA+E+I AA + S AI+KK+EIER+A ++R Sbjct: 85 KTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANNDNKSVAIRKKEEIERIALSSR 195
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.101e-22 Identity = 50/111 (45.05%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334 K A EI+ T QNP+QV+++A+ NS PRE+ TR+ G+ ++VD+SP RR+++A+ + GA +F++ I ECLA+E+I A++ NSYA+ KK+EIERVA + R Sbjct: 77 KEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSFKSKVPIEECLANEIILASRNDGNSYAVSKKEEIERVAASAR 187 The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bpback to top |