CX300039

Overview
NameCX300039
Unique NameCX300039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.030e-20
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:  105 KEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.030e-20
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            + A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ L+  G   ++ +  K +A  LA+ELI AA G    Y++ K++E ERVAK+ R
Sbjct:   84 RDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAGVYSASHKKKKPVANALAEELIAAANGDVKCYSVAKREERERVAKSAR 194          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.295e-20
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:  105 KEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     ++A  +K+EIER+A+++R
Sbjct:  105 KEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 47/109 (43.12%), Postives = 76/109 (69.72%), Query Frame = 2
Query:    8 AMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G+ ++AF++ ++ AECLA ELI A+   +  ++I +KD  ERVAKA R
Sbjct:   78 AFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAFKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAKAAR 186          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSN-SYAIKKKDEIERVAKANR 334
            K+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  +  GA   AFR+ +++AE LA+E+I AA+   N S+AI++K+EIER+A ++R
Sbjct:   97 KYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAEALAEEIIAAAEYDRNRSFAIRRKEEIERIALSSR 208          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            + A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F+     AE LA++L  AA  +  +YAI +K E ERVA A R
Sbjct:  100 RDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERVAAAAR 210          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.943e-19
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:  105 KEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.328e-19
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    8 AMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            A ++I+  T QNP+QV+VDAV N+GPRE+  R+   G+   ++VD +P+RRVN A+  +     + + +  K     LADELI AAKG +  +++ KK+E+ER+AK+ R
Sbjct:   86 AFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTALRYIALATWKGSHKTKKPAYLVLADELIMAAKGDAKCFSVGKKEEVERIAKSAR 194          
BLAST of CX300039 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.653e-19
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 KHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 334
            K A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:  108 KEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218          
The following BLAST results are available for this feature:
BLAST of CX300039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRKO1.030e-2046.8530S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_METHJ1.030e-2043.2430S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_THEON2.295e-2045.9530S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_THECE2.997e-2045.0530S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_METBU6.678e-2043.1230S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_KORCO6.678e-2050.0030S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_HALSA1.488e-1945.9530S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_PYRFU1.943e-1945.9530S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_METLZ4.328e-1942.2030S ribosomal protein S7P OS=Methanocorpusculum la... [more]
RS7_PYRHO5.653e-1945.9530S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionC07005D05SK SaltLeaf1 Citrus clementina cDNA clone C07005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300039 ID=CX300039; Name=CX300039; organism=Citrus clementina; type=EST; length=399bp
TAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAACCCAATTC
AAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACC
CGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCC
ATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTG
AATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAA
CTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCAAGAAGAA
GGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACGTGATAGTG
GAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAAACTTTTG
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