CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: ACT3_STRCO (Putative ketoacyl reductase OS=Streptomyces coelicolor GN=actIII PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.192e-16
Identity = 56/137 (40.88%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  105 CDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDE-AKHNILDNDQAEFELVLSVNLVGVFLGTKHAARV--MKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLA 506
            CDV    EIE  V   V +YG +D++ NNAG     A   + D    +   V+  NL GVF  TK   +   M   G G I++ AS  G  G V +  Y++SKHGVVG  K   +EL R GI VN V P  V TP+A
Sbjct:   62 CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLD---VVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMA 195          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = 3
Query:   99 VHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGI--VDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKP---AGR--GSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKD 512
            +H DV   + +   V+ AVS  G+LDI+  NAGI  V    H+I DN   +   ++ +NL GV+    H A+V  P   AG   GSI+ T+S  G+ G      Y+++KHGVVGLM++ A+EL    +RVN + P  V TP+ ++
Sbjct:   72 IHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIASVPFLSHDIPDNTWRQ---MIDINLTGVW----HTAKVAVPHILAGERGGSIVLTSSAAGLKGYAQISHYSAAKHGVVGLMRSLALELAPHRVRVNSLHPTQVNTPMIQN 209          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            D+TK  EI + +     ++G  DI+ NNAG+  +    I D    +++ +++VNL   F   + A   MK  G G II+ AS  G++      AY ++KHG++GL K  A+E+   G+ VN + P  V TPL +
Sbjct:   61 DMTKPSEIADMMAMVADRFGGADILVNNAGV--QFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVE 192          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.384e-15
Identity = 45/147 (30.61%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   96 YVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGS---IISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAV--ELGRFGIRVNCVSPYVVATPLAKDFYK 521
            ++ CDV  +K++ +     V  +G+LDI+ NNAG+          N++  +E  L +NLV V  GT      M     G    II+ +S+ G++       Y +SKHG++G  ++AA+   L + G+R+N + P  V TP+ +   K
Sbjct:   60 FIQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEK 196          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.384e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  222 ILDNDQAEFELVLSVNLVGVFLGTKHAARVM-KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +L   + +++ V++VNL G FL T+ AA+ +    GRGSII+ +S+ G +G +    Y SSK GV+GL + AA ELGR GIR N V P  +ATP+ +
Sbjct:  110 LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ 206          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.384e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  222 ILDNDQAEFELVLSVNLVGVFLGTKHAARVM-KPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +L   + +++ V++VNL G FL T+ AA+ +    GRGSII+ +S+ G +G +    Y SSK GV+GL + AA ELGR GIR N V P  +ATP+ +
Sbjct:  111 LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ 207          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 54/168 (32.14%), Postives = 87/168 (51.79%), Query Frame = 3
Query:    9 VLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCG-VIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +++ DI D++ E +  ++G      + C+ V  DV     ++ AV  A    G++DI+ NNAG+      N LD  + + +  + +N+ GV+  TK     M     G I+  +SV G ++      AY  SK  +VGL K+ AVE  + GIRVN + P  V TP+A+
Sbjct:   33 LILLDISDEI-EKLADELGGR---GHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLG--NFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAE 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 54/168 (32.14%), Postives = 87/168 (51.79%), Query Frame = 3
Query:    9 VLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCG-VIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            +++ DI D++ E +  ++G      + C+ V  DV     ++ AV  A    G++DI+ NNAG+      N LD  + + +  + +N+ GV+  TK     M     G I+  +SV G ++      AY  SK  +VGL K+ AVE  + GIRVN + P  V TP+A+
Sbjct:   33 LILLDISDEI-EKLADELGGR---GHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLG--NFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAE 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 46/147 (31.29%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   96 YVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGS---IISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAV--ELGRFGIRVNCVSPYVVATPLAKDFYK 521
            +V CDV  +K++ +     V  +G+LDI+ NNAG+          N++  +E  L +NLV V  GT      M     G    II+ +S+ G++       Y +SKHG++G  ++AA+   L + G+R+N + P  V TP+ +   K
Sbjct:   60 FVQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEK 196          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   96 YVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVM--KPAGRGSI-ISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAV--ELGRFGIRVNCVSPYVVATPLAKDFYK 521
            ++ CDV  ++++ +     V  +GKLDI+ NNAG+          N++  +E  L +NLV V  GT      M  +  G G I I+ +S+ G++       Y +SKHG+VG  ++AA+   L   G+R+N + P  V TP+ K   K
Sbjct:   60 FIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEK 196          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
ACT3_STRCO8.192e-1640.88Putative ketoacyl reductase OS=Streptomyces coelic... [more]
LIMC_RHOER1.070e-1538.62(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
BDHA_RHIME1.070e-1534.33D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
PGDH_RAT2.384e-1530.6115-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
DHB8_RAT2.384e-1544.33Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
DHB8_MOUSE2.384e-1544.33Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]
UCPA_SALTY4.066e-1532.14Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI4.066e-1532.14Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
PGDH_MOUSE4.066e-1531.2915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_BOVIN4.066e-1532.6515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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