CX300083

Overview
NameCX300083
Unique NameCX300083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            THTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   15 THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_BOVIN (60S ribosomal protein L37 OS=Bos taurus GN=RPL37 PE=3 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            THTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   15 THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            THTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+++ V RRF++GFREGT
Sbjct:   15 THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREGT 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans GN=rpl37 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.511e-23
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            THTLC RCGRRS+H+QKS CA C YPAA+ R YNWS KA RRKTTG+GR  +LR V RRFK+GF+ GT
Sbjct:   15 THTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGT 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37B_SCHPO (60S ribosomal protein L37-B OS=Schizosaccharomyces pombe GN=rpl37b PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 5.511e-23
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            +HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:   15 SHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_DEBHA (60S ribosomal protein L37 OS=Debaryomyces hansenii GN=RPL37 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.198e-23
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            +H LC RCG+RSFH+QK  CA+C YPAA+ R++NW+ KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:   15 SHVLCNRCGKRSFHVQKKTCASCGYPAAKLRSHNWATKAKRRRTTGTGRMAYLKHVSRRFKNGFQTG 81          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe GN=rpl37a PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 7.198e-23
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            +HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:   15 SHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_DICDI (60S ribosomal protein L37 OS=Dictyostelium discoideum GN=rpl37 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.228e-22
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            +HTLC RCG+ SFH+QK  CA+C YP+A+ R+YNWS+KA RRKTTGTGR RYL+ V +RF SGF+E +
Sbjct:   15 SHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTGRTRYLKTVHKRFNSGFKEAS 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_CAEEL (60S ribosomal protein L37 OS=Caenorhabditis elegans GN=rpl-37 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.958e-22
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            +HTLC RCG+ SFH+QK RCA+C Y  A+KRTYNW  K+IRR+TTGTGR R+LR V  RF++GFR  T
Sbjct:   15 SHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTT 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni GN=RPL37 PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            +HT C RCGR+S+H+QK  C++C YP+AR R YNWS KA RR+TTGTGRM +L+ V RRFK GFR G
Sbjct:   15 SHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSG 81          
The following BLAST results are available for this feature:
BLAST of CX300083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL37_HUMAN1.894e-2370.5960S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]
RL37_BOVIN1.894e-2370.5960S ribosomal protein L37 OS=Bos taurus GN=RPL37 P... [more]
RL37_ICTPU2.474e-2369.1260S ribosomal protein L37 OS=Ictalurus punctatus G... [more]
RL37_EMENI5.511e-2370.5960S ribosomal protein L37 OS=Emericella nidulans G... [more]
RL37B_SCHPO5.511e-2367.1660S ribosomal protein L37-B OS=Schizosaccharomyces... [more]
RL37_DEBHA7.198e-2365.6760S ribosomal protein L37 OS=Debaryomyces hansenii... [more]
RL37A_SCHPO7.198e-2367.1660S ribosomal protein L37-A OS=Schizosaccharomyces... [more]
RL37_DICDI1.228e-2264.7160S ribosomal protein L37 OS=Dictyostelium discoid... [more]
RL37_CAEEL7.958e-2264.7160S ribosomal protein L37 OS=Caenorhabditis elegan... [more]
RL37_SCHMA2.315e-2164.1860S ribosomal protein L37 OS=Schistosoma mansoni G... [more]

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Properties
Property NameValue
Genbank descriptionC07005H04SK SaltLeaf1 Citrus clementina cDNA clone C07005H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300083 ID=CX300083; Name=CX300083; organism=Citrus clementina; type=EST; length=435bp
AGACGCACACTTTGTGTGTGCGATGTGGCCGTCGCAGCTTCCATCTTCAG
AAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTGCTCGCAAGAGAACGTA
TAACTGGAGTGTGAAGGCAATCCGAAGAAAGACCACTGGAACCGGCAGGA
TGAGGTATCTGCGCCATGTCCCTCGCAGGTTCAAGAGCGGCTTCAGAGAA
GGTACTCAGGCAGCACCAAGGAAGAAGGGAGCAGCTGCCTCTGCTTAAGG
AGTTGAAGGGTAATTTTGGGCGTGAATCAGCACCTCATTATAGATTTAGT
CTTCTTTAATGTGTGGAGACAAGATTCATGGGAACATAATTTTGAAAAAG
GATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAATTATGATTACTATGTA
GTCTTTTTCAATTTTGGACAAGATGAATGAGTTTA
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