CX300097

Overview
NameCX300097
Unique NameCX300097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + +
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  A  + + SIPT++ FK+G+  + I
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRI 95          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  A  + + SIPT++ FK+G+  + I
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRI 95          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.977e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  250 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESI 501
            VTDS+++  + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A K+ + SIPT++ FK+GE  + +
Sbjct:    6 VTDSNFDENIQSGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKV 87          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 34/70 (48.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  277 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQ 117          
BLAST of CX300097 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 34/70 (48.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  277 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 486
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQ 117          
The following BLAST results are available for this feature:
BLAST of CX300097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
THIO_STAAM4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB4.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA84.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA34.677e-1847.62Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_MYCTU4.677e-1847.62Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO4.677e-1847.62Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_STAHJ7.977e-1847.62Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO2_SHIFL1.361e-1748.57Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI1.361e-1748.57Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07006A07SK SaltLeaf1 Citrus clementina cDNA clone C07006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300097 ID=CX300097; Name=CX300097; organism=Citrus clementina; type=EST; length=502bp
GAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAG
CACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGA
AGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTCTCATTC
ACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAA
CTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGG
TGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTG
CTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCC
AGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCA
AGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGA
AGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCAT
CA
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