CX300140

Overview
NameCX300140
Unique NameCX300140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            R RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGPI N A HL+DP++
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            R RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            R RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGPI N A HL+DP++
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.405e-22
Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP + A L++ E+K+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.405e-22
Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.835e-22
Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.397e-22
Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGP+ N A HLSDP++
Sbjct:   98 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.397e-22
Identity = 72/160 (45.00%), Postives = 91/160 (56.88%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGPI N A H++DP+
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.130e-22
Identity = 68/156 (43.59%), Postives = 90/156 (57.69%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSEL---DPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433
            RE E+IH RWAML  LG +T E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R +     + E  +YPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGPI N + HL+DP
Sbjct:   95 RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.088e-22
Identity = 71/162 (43.83%), Postives = 91/162 (56.17%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R RE E+IH RWAML  LG LT E L  +G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N   HL+DP+
Sbjct:   96 RNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB22_ARATH8.238e-2343.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL8.238e-2344.10Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ARATH8.238e-2343.48Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_APIGR1.405e-2242.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ1.405e-2244.10Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.835e-2244.10Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA2.397e-2243.48Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_LEMGI2.397e-2245.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU3.130e-2243.59Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_PHYPA4.088e-2243.83Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07006F08SK SaltLeaf1 Citrus clementina cDNA clone C07006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bp
GAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTA
CTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGAC
GCTGGCAAGGTACAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACT
TCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGTAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
ATGCATTCCTTGGCTTCGCTAGCCAAGCTGTTGTCACCGGAAAAGGCCCT
ATCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCT
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