CX300140

Overview
NameCX300140
Unique NameCX300140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 71/161 (44.10%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGPI N A HL+DP++
Sbjct:  108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 70/162 (43.21%), Postives = 94/162 (58.02%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGPI N + H++DP+
Sbjct:   65 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   99 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 255          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.340e-22
Identity = 70/162 (43.21%), Postives = 90/162 (55.56%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R RE E+IH RWAML  LG    E L   G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   LYPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGPI N   H++DP+
Sbjct:   93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.974e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 66/158 (41.77%), Postives = 87/158 (55.06%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLTGIT--------WQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R  E+IHGRWAML  LG +  E L            W  AG     +G   YLG P      SI  ++  +V+++G +E  R + L        LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N   HL +P+
Sbjct:   93 RALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2A_PINSY5.340e-2244.10Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_SOLLC5.340e-2243.21Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PEA5.340e-2242.86Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB215_PEA5.340e-2243.21Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB22_TOBAC6.974e-2243.48Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC9.108e-2243.48Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL9.108e-2243.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_TOBAC9.108e-2243.48Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_SOLLC9.108e-2241.77Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_TOBAC9.108e-2243.48Chlorophyll a-b binding protein 16, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07006F08SK SaltLeaf1 Citrus clementina cDNA clone C07006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bp
GAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTA
CTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGAC
GCTGGCAAGGTACAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACT
TCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGTAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
ATGCATTCCTTGGCTTCGCTAGCCAAGCTGTTGTCACCGGAAAAGGCCCT
ATCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCT
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