CX300140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 9.108e-22 Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ E+K+ RLAM + GF QA+VTGKGP+ N A H++DP++ Sbjct: 92 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 248
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21 Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21 Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP +YPGG F DPLGLA DP A +++ EIK+ RLAM + GF QA+VTGKGPI N A HL+DP++ Sbjct: 108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21 Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21 Identity = 68/161 (42.24%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DP A L++ E+K+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 86 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 242
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21 Identity = 70/160 (43.75%), Postives = 91/160 (56.88%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R LDP +YPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGPI N HL+DP+ Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21 Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGPI N A HL+DP++ Sbjct: 104 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21 Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R +DP LYPGG F DPLGLA DP A +++ E+K+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21 Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436 R RE E+IH RWAML LG + E L+ G+T W AG EG YLG P +++ I +V+++G++E R LD ++YPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGPI N H++DP+ Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21 Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVN 252 The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bpback to top |