CX300140

Overview
NameCX300140
Unique NameCX300140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21
Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E     GI      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   85 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.650e-21
Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGPI N + H++DP+
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.650e-21
Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 69/161 (42.86%), Postives = 86/161 (53.42%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVQLVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433
            R+RE ELIH RWAML  LG  T E L           W  AG     EG   YLG P       ++    ++V+++G IE  R         LDP   LYPG + FDPLGLA DP   A L++ EIK+ RLA  +  GF  QA+VTGKGP+ N   HL++P
Sbjct:   81 RYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP++N   HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++  IK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGPI N   H++DP+
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP   A L++ E+K+ RLAM +  GF  QA+VTGKGPI N   H++DP+
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21
Identity = 69/161 (42.86%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLT--GITWQDA----GKVQLVE--GSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            RE E+IH RWAML  LG +  E L   G+ + +A    G  Q+    G  YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB23_PETSP2.029e-2143.48Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_CUCSA2.029e-2142.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC2.650e-2142.59Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PETSP2.650e-2142.86Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2_CHLRE3.461e-2142.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC3.461e-2143.48Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC3.461e-2142.86Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_ORYSJ3.461e-2142.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.461e-2142.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL3.461e-2142.86Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07006F08SK SaltLeaf1 Citrus clementina cDNA clone C07006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bp
GAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTA
CTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGAC
GCTGGCAAGGTACAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACT
TCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGTAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
ATGCATTCCTTGGCTTCGCTAGCCAAGCTGTTGTCACCGGAAAAGGCCCT
ATCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCT
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