CX300140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21 Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E GI W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21 Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DP A L++ E+K+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 85 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.650e-21 Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436 R RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R LD ++YPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGPI N + H++DP+ Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.650e-21 Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 96 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21 Identity = 69/161 (42.86%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVQLVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433 R+RE ELIH RWAML LG T E L W AG EG YLG P ++ ++V+++G IE R LDP LYPG + FDPLGLA DP A L++ EIK+ RLA + GF QA+VTGKGP+ N HL++P Sbjct: 81 RYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21 Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP++N HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21 Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ IK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21 Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436 R RE E+IH RWAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP A L++ E+K+ RLAM + GF QA+VTGKGPI N H++DP+ Sbjct: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21 Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVQLVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436 R RE E+IH RWAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP A L++ E+K+ RLAM + GF QA+VTGKGPI N H++DP+ Sbjct: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.461e-21 Identity = 69/161 (42.86%), Postives = 93/161 (57.76%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLT--GITWQDA----GKVQLVE--GSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 RE E+IH RWAML LG + E L G+ + +A G Q+ G YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253 The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bpback to top |