CX300140

Overview
NameCX300140
Unique NameCX300140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.468e-16
Identity = 65/174 (37.36%), Postives = 81/174 (46.55%), Query Frame = 2
Query:    5 FRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457
            F + EL++GRWAML   G L  E  T I       W  AGK +    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A     K      EI + RLAM AFLGF  Q  VTGKGP +N   H+SDP H TI+ T
Sbjct:   91 FVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 2
Query:   17 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTIL 451
            E+I+GR+AML  +GA+  E+L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK         YPGG FF+PLG   D      L+L E+K+ RLAM A LG+  Q +VTG GP  N   H++DP++  +L
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 59/173 (34.10%), Postives = 82/173 (47.40%), Query Frame = 2
Query:   17 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTIL 451
            E+I+GR+AML   GA+  E L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK L       YPGG  F+PLG   D      L+L EIK+ RLAM A LG+  QA+VTG GP  N   HL+DP++  +L
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15
Identity = 61/165 (36.97%), Postives = 82/165 (49.70%), Query Frame = 2
Query:    5 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPI 403
            +RE ELIHGRWAM A LG    +  +GI W +AG           G   PFS  +L+  ++L++G++E +R        +  +D                 ++ YPGGKFFDPL LA          D  K   L+LAEIKH+RLAM A L F  +A   GK P+
Sbjct:   96 YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:   11 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  134 YLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439
            YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPL    DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N A HL+DP++
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB24_PEA7.468e-1637.36Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB23_PEA1.274e-1532.37Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC1.274e-1534.10Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4B_SOLLC2.173e-1536.97Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2D_SOLLC1.078e-1448.96Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.078e-1448.96Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.078e-1448.96Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.839e-1447.92Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.839e-1447.92Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA5.352e-1443.12Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionC07006F08SK SaltLeaf1 Citrus clementina cDNA clone C07006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bp
GAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTA
CTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGAC
GCTGGCAAGGTACAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACT
TCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGTAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
ATGCATTCCTTGGCTTCGCTAGCCAAGCTGTTGTCACCGGAAAAGGCCCT
ATCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCT
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