CX300140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.468e-16 Identity = 65/174 (37.36%), Postives = 81/174 (46.55%), Query Frame = 2 Query: 5 FRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457 F + EL++GRWAML G L E T I W AGK + SS TL IE ++ Y+E +R ++ DP + Y PGG F+PL A K EI + RLAM AFLGF Q VTGKGP +N H+SDP H TI+ T Sbjct: 91 FVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15 Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 17 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTIL 451 E+I+GR+AML +GA+ E+L T + W G + +Y TL +E+ ++G+ E +R + L EK YPGG FF+PLG D L+L E+K+ RLAM A LG+ Q +VTG GP N H++DP++ +L Sbjct: 102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15 Identity = 59/173 (34.10%), Postives = 82/173 (47.40%), Query Frame = 2 Query: 17 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTIL 451 E+I+GR+AML GA+ E L T + W G + +Y TL +E+ ++G+ E +R + L EK L YPGG F+PLG D L+L EIK+ RLAM A LG+ QA+VTG GP N HL+DP++ +L Sbjct: 100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15 Identity = 61/165 (36.97%), Postives = 82/165 (49.70%), Query Frame = 2 Query: 5 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPI 403 +RE ELIHGRWAM A LG + +GI W +AG G PFS +L+ ++L++G++E +R + +D ++ YPGGKFFDPL LA D K L+LAEIKH+RLAM A L F +A GK P+ Sbjct: 96 YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14 Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 IW +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 11 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14 Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 IW +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14 Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 IW +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14 Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 IW +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A H++DP++ Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14 Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 173 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 IW +V+++G +E R +DP LYPGG F DPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A H++DP++ Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14 Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 2 Query: 134 YLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLH 439 YLG P +++ I +V+++G +E R + P E LYPGG F DPL DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N A HL+DP++ Sbjct: 3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110 The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bpback to top |