CX300140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12 Identity = 58/156 (37.18%), Postives = 79/156 (50.64%), Query Frame = 2 Query: 8 RECELIHGRWAMLATLGALTVEWLTGI-------TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHL 424 RE E+IH R AM A LG + E L+ + W AG EG YLG P +++ I +V+++G +E R + DP LYPG FD LGLA D A L++ E+K+ RLAM + GF QA+V+ K + N A HL Sbjct: 99 RELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12 Identity = 55/153 (35.95%), Postives = 71/153 (46.41%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457 R R E+ HGR AMLA +GAL ++L W +A + ++ +G + I G E R E +YPG FDPL L D K+A EIK+ RLA+ A LGF Q V G P+ N A HL PL I D+ Sbjct: 39 RMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADS 170 HSP 2 Score: 68.5514 bits (166), Expect = 1.457e-11 Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTI 448 R R E+ HGR AML T+G + E L W +AG V+G + + T W G +Q+ ELD R YPG FDPL L D + AE+K+ RLA+ A G +Q + TG+ P+ N + HL++P+ I Sbjct: 224 RMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAG--DSVDGLKLGFITMAIAAPTEYWRGQ---GGFNWQKG-ELD---RSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11 Identity = 55/168 (32.74%), Postives = 77/168 (45.83%), Query Frame = 2 Query: 5 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457 F + ++++GRWAML G L E LT AG + E G+ F+ ++ + Y+E +R + L P + YPG + F+PL A K+ E+ + RLAM AFLGF Q V GKGP N HL+DP H TI+ T Sbjct: 71 FVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQT 227 The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bpback to top |