CX300140

Overview
NameCX300140
Unique NameCX300140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 58/156 (37.18%), Postives = 79/156 (50.64%), Query Frame = 2
Query:    8 RECELIHGRWAMLATLGALTVEWLTGI-------TWQDAGKVQLVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHL 424
            RE E+IH R AM A LG +  E L+ +        W  AG     EG   YLG P      +++ I   +V+++G +E  R +        DP   LYPG   FD LGLA D    A L++ E+K+ RLAM +  GF  QA+V+ K  + N A HL
Sbjct:   99 RELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 55/153 (35.95%), Postives = 71/153 (46.41%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457
            R R  E+ HGR AMLA +GAL  ++L    W +A +      ++ +G          + I     G  E  R   E      +YPG   FDPL L  D  K+A     EIK+ RLA+ A LGF  Q  V G  P+ N A HL  PL   I D+
Sbjct:   39 RMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADS 170          

HSP 2 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTI 448
            R R  E+ HGR AML T+G +  E L    W +AG    V+G       +  +  T  W      G   +Q+  ELD   R YPG   FDPL L  D       + AE+K+ RLA+ A  G  +Q + TG+ P+ N + HL++P+   I
Sbjct:  224 RMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAG--DSVDGLKLGFITMAIAAPTEYWRGQ---GGFNWQKG-ELD---RSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 55/168 (32.74%), Postives = 77/168 (45.83%), Query Frame = 2
Query:    5 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457
            F + ++++GRWAML   G L  E LT      AG +   E     G+   F+ ++      +   Y+E +R                 +  L P +  YPG + F+PL  A    K+      E+ + RLAM AFLGF  Q  V GKGP  N   HL+DP H TI+ T
Sbjct:   71 FVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQT 227          
The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_MALDO2.937e-1237.18Chlorophyll a-b binding protein AB10, chloroplasti... [more]
LH18_EUGGR6.542e-1235.95Light-harvesting complex I LH38 proteins (Fragment... [more]
CB120_HORVU1.116e-1132.74Chlorophyll a-b binding protein 1B-20, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC07006F08SK SaltLeaf1 Citrus clementina cDNA clone C07006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bp
GAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTA
CTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGAC
GCTGGCAAGGTACAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACT
TCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGTAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
ATGCATTCCTTGGCTTCGCTAGCCAAGCTGTTGTCACCGGAAAAGGCCCT
ATCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCT
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