CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.540e-32
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA ++F  E  ++R DMSE+ EKH + RLIGAPPGYV  E  GQLTE VRR+PY V+L DE +KAH DV  ++L  LD+G++TDS G    F NT+I+MTSN+G   +L+
Sbjct:  546 GKTELTKALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRKPYAVVLFDEFEKAHPDVSKLLLQVLDEGKLTDSLGHHVDFRNTIIVMTSNIGQDILLN 663          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA  +F  EEA+VR DMSEYMEKH+I +LIG+ PGYVGYEE G L+E +RRRPY V+L DEI+KA  +V N++L   DDG +TD +    +  N + IMTSN+GS  + D
Sbjct:  610 GKTELAKALADLLFNKEEAMVRFDMSEYMEKHSISKLIGSSPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKADKEVLNILLQVFDDGILTDGKKRKVNCKNALFIMTSNIGSPELAD 727          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.982e-32
Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKT L++ +A  MF  E++L+++DMSEYMEK A  +++G+PPGYVG+EE G LTE VRRRPY V+L DEI+KAH D+ +++L  L+ GR+TDS G    F NT+IIMTSN+G+  I
Sbjct:  576 GKTLLAQQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNLGADLI 691          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.304e-31
Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKT L++ +A  MF  E++L+++DMSEYMEK A  +++G+PPGYVG+EE G LTE VRRRPY V+L DEI+KAH D+ +++L  L+ GR+TDS G    F NT+IIMTSN+G+  I
Sbjct:  593 GKTLLAQQIAVEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNLGADLI 708          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HSP98_NEUCR (Heat shock protein hsp98 OS=Neurospora crassa GN=hsp98 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.703e-31
Identity = 59/116 (50.86%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKT L+KALA ++F   +A++R DMSEY E+H++ R+IGAPPGYVG++  GQLTE +RR+P+ ++L DE++KA  +V  V+L  +DDGR+TD QG      N +++MTSN+G++Y+
Sbjct:  640 GKTLLTKALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDSGGQLTEALRRKPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRVVDARNCIVVMTSNLGAEYL 755          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.441e-30
Identity = 63/116 (54.31%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GK+ L++ +A  MF  E+AL+++DMSEYMEK A  +++G+PPGYVG+EE G LTE VRRRPY V+L DEI+KAH D+ +++L  L+ GR+TDS G    F + +IIMTSN+G+  I
Sbjct:  574 GKSLLAQQIAIEMFGGEDALIQVDMSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKVDFRHAIIIMTSNLGADLI 689          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPA_RHOBL (ClpA homolog protein OS=Rhodopseudomonas blastica PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.718e-29
Identity = 62/113 (54.87%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTE++K LA  +      L+R DMSEYMEKHA+ RLIGAPPGYVG+++ G LT+GV + P+ V+L DEI+KAH DV+N++L  +D G++TD  G    F N ++IMTSNVG+
Sbjct:  530 GKTEVAKQLAATLGVE---LLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCVLLLDEIEKAHPDVYNILLQVMDHGKLTDHNGRAVDFRNVILIMTSNVGA 639          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HS104_YEAST (Heat shock protein 104 OS=Saccharomyces cerevisiae GN=HSP104 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 57/116 (49.14%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+K +A ++F  E+ ++R+D SE  EK+A+ +L+G   GYVGY+E G LT  ++ +PY V+L DE++KAH DV  V+L  LDDGR+T  QG T   +N ++IMTSN+G+++I
Sbjct:  619 GKTELAKKVAGFLFNDEDMMIRVDCSELSEKYAVSKLLGTTAGYVGYDEGGFLTNQLQYKPYSVLLFDEVEKAHPDVLTVMLQMLDDGRITSGQGKTIDCSNCIVIMTSNLGAEFI 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTELS+ALA  MF  E AL  IDMSEY ++ A+ +LIG   GYVGYE+    LTE VRR PY VIL DEI+KA   V  ++L  +DDGR+TD QG    F NT+IIMTSN G
Sbjct:  516 GKTELSQALALDMFGNENALFGIDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSVILLDEIEKADPQVLTLLLQVMDDGRLTDGQGSVIDFRNTIIIMTSNAG 628          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTE + A+A  M+  E+ L+ I+MSEY E H +  L G+PPGYVGY E G LTE VRR+PY V+L DEI+KAHSDV  +     D G++ D +G    F NT++++TSNVGS+ + ++
Sbjct:  631 GKTETALAIAESMYGGEQNLITINMSEYQESHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNL 749          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
HSP78_YEAST1.540e-3256.78Heat shock protein 78, mitochondrial OS=Saccharomy... [more]
CLPB_CHLPN4.481e-3257.63Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]
CLPC_CHLTR9.982e-3256.03Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLMU1.304e-3156.03Probable ATP-dependent Clp protease ATP-binding su... [more]
HSP98_NEUCR1.703e-3150.86Heat shock protein hsp98 OS=Neurospora crassa GN=h... [more]
CLPC_CHLPN1.441e-3054.31Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPA_RHOBL2.718e-2954.87ClpA homolog protein OS=Rhodopseudomonas blastica ... [more]
HS104_YEAST2.301e-2849.14Heat shock protein 104 OS=Saccharomyces cerevisiae... [more]
CLPL_LACLA1.948e-2758.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_YEREN1.948e-2749.58Chaperone protein clpB OS=Yersinia enterocolitica ... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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