CX300183

Overview
NameCX300183
Unique NameCX300183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIH_PONAB (Ferritin heavy chain OS=Pongo abelii GN=FTH1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVG 323
            KLM+ QN+RGG++ LQ I  P  + D  E G  L AME                HK+A   +D  L DF+E+ YL+EQV+AIK++ ++V  LR++G
Sbjct:   69 KLMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFLETHYLNEQVKAIKELGDHVTNLRKMG 160          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIH_FELCA (Ferritin heavy chain OS=Felis catus GN=FTH1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVG---QGHGVWHFDQMLL 362
            KLM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A   +D  L DF+E+ YL+EQV++IK++ ++V  LR++G    G   + FD+  L
Sbjct:   69 KLMKLQNQRGGRIFLQDIKKP----DRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGTPESGMAEYLFDKHTL 176          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIH_CANFA (Ferritin heavy chain OS=Canis familiaris GN=FTH1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVG---QGHGVWHFDQMLL 362
            KLM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A   +D  L DF+E+ YL+EQV++IK++ ++V  LR++G    G   + FD+  L
Sbjct:   69 KLMKLQNQRGGRIFLQDIKKP----DRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTL 176          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIL_XENLA (Ferritin light chain, oocyte isoform OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 3
Query:   42 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRV---GQGHGVWHFDQMLLHGEE 374
            +++QNKRGG+V LQ +  P    D  E G+   AME                HK+A  + D  + D++E E+L E+V+ IKK+ +++  LRRV    +G G + FD++ L GE+
Sbjct:   69 LKFQNKRGGRVVLQDVKKP----DDDEWGNGTKAMEVALNLEKSINQAVLDLHKIATDHTDPHMQDYLEHEFLEEEVKLIKKLGDHLTNLRRVKAAEEGMGEYLFDKLTL-GED 177          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIH_CRIGR (Ferritin heavy chain OS=Cricetulus griseus GN=FTH1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVG---QGHGVWHFDQMLL-HGE 371
            KLM+ QN+RGG++ LQ I  P    D  +    L AME                HK+A   +D  L DF+E+ YL+EQV++IK++ ++V  LR++G    G   + FD+  L H E
Sbjct:   74 KLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDKHTLGHSE 185          
The following BLAST results are available for this feature:
BLAST of CX300183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
FRIH_PONAB2.546e-1140.63Ferritin heavy chain OS=Pongo abelii GN=FTH1 PE=2 ... [more]
FRIH_FELCA2.546e-1135.71Ferritin heavy chain OS=Felis catus GN=FTH1 PE=2 S... [more]
FRIH_CANFA2.546e-1135.71Ferritin heavy chain OS=Canis familiaris GN=FTH1 P... [more]
FRIL_XENLA3.325e-1135.09Ferritin light chain, oocyte isoform OS=Xenopus la... [more]
FRIH_CRIGR3.325e-1136.21Ferritin heavy chain OS=Cricetulus griseus GN=FTH1... [more]

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Properties
Property NameValue
Genbank descriptionC07007B11SK SaltLeaf1 Citrus clementina cDNA clone C07007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300183 ID=CX300183; Name=CX300183; organism=Citrus clementina; type=EST; length=423bp
AGGAATCAAGTGAAGAGGAAAGAGAGCATGCTGAGAAATTGATGGAATAT
CAGAACAAACGAGGAGGTAAAGTGAAGCTGCAATCAATATTGATGCCTCT
CTCTGAGTTTGATCATGCTGAGAAAGGAGATGCTTTGTATGCCATGGAGC
TTACGCTGTCTCTGGAGAAGCTAACAAATGAGAAACTCCTCAACTTGCAC
AAGGTGGCCAACAAGAACCATGATGTGCAGTTGGCAGATTTCGTTGAAAG
CGAGTATTTACATGAGCAGGTAGAAGCCATCAAAAAGATATCTGAATATG
TTGCTCAGCTGAGAAGAGTTGGCCAGGGGCATGGTGTCTGGCACTTTGAT
CAAATGCTGCTCCATGGGGAGGAAGTCGTCGCATGATGGTGGACACATCT
TGCTTGTCACCTGACTATCCCTA
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