CX300185

Overview
NameCX300185
Unique NameCX300185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 69.707 bits (169), Expect = 5.423e-12
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 3
Query:   15 QEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVAN 248
            +EVNAA   +A+ ELKGIL+  +EPLVS D+                +   MVKV++W+DNE GYS RVVDLA  +A+
Sbjct:  255 EEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 332          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.083e-12
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 3
Query:   15 QEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVA 245
            ++VN A  E+A+ +LKGIL   +EPLVS D+                M  +MVKVI+W+DNE GYS RVVDLA  +A
Sbjct:  255 EDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   15 QEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDL 230
            +++ AA  E ++  LKGIL   DE LVS DF+               + D+ VK+++W+DNEWGYS RVVDL
Sbjct:  226 EQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 297          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLAD 236
            A+EVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAW+DNEWGYS RVVD+A+
Sbjct:  255 AEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLAD 236
            A+EVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAW+DNEWGYS RVVD+A+
Sbjct:  255 AEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLAD 236
            A+EVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAW+DNEWGYS RVVD+A+
Sbjct:  255 AEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLAD 236
            A+EVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAW+DNEWGYS RVVD+A+
Sbjct:  255 AEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLAD 236
            A+EVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAW+DNEWGYS RVVD+A+
Sbjct:  255 AEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLAD 236
            A+EVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAW+DNEWGYS RVVD+A+
Sbjct:  255 AEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.515e-11
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   18 EVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVA 245
            E+NAA  E+++ ELKGIL   ++ +VS DFR               +  +  KV++W+DNEWGYS +V ++A ++A
Sbjct:  256 EINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
The following BLAST results are available for this feature:
BLAST of CX300185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
G3P_BACST5.423e-1246.15Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BACME7.083e-1246.75Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PC_HORVU2.061e-1143.06Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_STAAW2.692e-1148.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS2.692e-1148.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR2.692e-1148.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN2.692e-1148.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM2.692e-1148.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC2.692e-1148.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_BACFR3.515e-1138.16Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]

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Properties
Property NameValue
Genbank descriptionC07007C01SK SaltLeaf1 Citrus clementina cDNA clone C07007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300185 ID=CX300185; Name=CX300185; organism=Citrus clementina; type=EST; length=430bp
AGAAAACCTTCGCACAAGAGGTGAACGCCGCTTTCACAGAAAGCGCTGAC
AATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGT
CGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACAC
TTGACATGGGAGACGACATGGTTAAGGTGATTGCATGGCATGACAATGAA
TGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAA
CTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAA
CGATGGTCTTGTTTTTCATTTTTGGCTCCCCCATTTATTGTTCTGCGTCT
TAGAATTTGTAGAATGTATAACACTATCTTATTATGGAACCTTTTTCCTT
TGCCTGTCATTAATCATTATGCAATAAAAT
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