CX300239

Overview
NameCX300239
Unique NameCX300239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_BRANA (Profilin OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.916e-40
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS NFPQ K +E   IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY+EP+TPGQCNM+VERLGDYLI+Q L
Sbjct:   33 GSVWAQSANFPQFKGQEFANIMKDFDEPGHLAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLIEQDL 134          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 4.330e-39
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWA+S +FP+ KP EI  I+ +FNE G LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+ IKKT  A++ GIYDEP+ PGQCNM+VERLGDYL+DQG+
Sbjct:   32 GTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQGM 133          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWA+S      KPE   GI   F  P  +   G  +GG KYM I+G+P ++  GKKG  G  + +T  A+I+GIYD+ + PG   +IVE+LGDYL D G
Sbjct:   27 GGVWAKSSGINITKPEG-DGIAALFKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNG 125          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G +WA+S    +L  +E+  +   F++   LA  G+ +GGTKY+ + G+   +IRGKK   GV I KT  A+++ +Y EP+ P QC ++VE+LGD+LI   L
Sbjct:   27 GSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLIQNDL 126          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G +WA+SE F ++  EE+T ++  F E   L  +G+ L G +Y+ + G    VIR K G  GV   KT+ A+++ +Y++P+ P Q   +VE+LGDYL+  G
Sbjct:   27 GNLWAKSEGF-EVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G +WAQS  F   K EE++ +++ F++   L   G+ L G +Y+ + G    V+R K G  GV   KT+ A+I+ IY++P+ P Q   +VE+LGDYLI  G
Sbjct:   27 GNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G  WA S  F  + P     + N F +   +   G  L GT+Y+ I+ +  +V  GKKG  GV   KTS A++IG+Y+E + PG    +VE+L DYLI QG
Sbjct:   27 GNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWA+SE F ++  +E+  I+  F     L   G+ + GT+Y+ + G    +IR K G  GV   KT  A++I +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct:   27 GNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 125          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWA S+N   LK  E   I+N F +  ++   G+++ G KY+ I+ +  ++  GKKG GGV + KT  +++IG Y+E + PGQ   +VE+L DYL + G
Sbjct:   27 GNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYLRENG 124          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_DICDI (Profilin-2 OS=Dictyostelium discoideum GN=proB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLID 297
            G VWA S  F   + + IT +   F + G    TG+++ G KYM I+ +  +   GK G GGV   KT   +I+ +YD+ + PG    I E+L DYLID
Sbjct:   27 GSVWAHSAGFNVAEGKAITAL---FQKDGAAFATGIHVAGKKYMAIKSDTRSAY-GKLGAGGVVCVKTLTCIIVAVYDDKLQPGAAANIAEKLADYLID 121          
The following BLAST results are available for this feature:
BLAST of CX300239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PROF_BRANA3.916e-4073.53Profilin OS=Brassica napus PE=2 SV=1[more]
PROF1_ARTVU4.330e-3970.59Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF1_DICDI3.020e-1644.55Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF_BRABE3.944e-1640.20Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF_APIME1.657e-1438.61Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF_DROME4.821e-1439.60Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF2_ACACA1.832e-1339.60Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF_BOMMO2.393e-1338.61Profilin OS=Bombyx mori PE=2 SV=1[more]
PROF1_PHYPO2.393e-1339.60Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]
PROF2_DICDI2.025e-1238.38Profilin-2 OS=Dictyostelium discoideum GN=proB PE=... [more]

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Properties
Property NameValue
Genbank descriptionC07007G09SK SaltLeaf1 Citrus clementina cDNA clone C07007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300239 ID=CX300239; Name=CX300239; organism=Citrus clementina; type=EST; length=541bp
GGAAAGGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGA
AATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAA
CTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCA
GGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAA
GACCAGTGCAGCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTG
GGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAG
GGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTG
CCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTC
AAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAG
TTCTTGATATCATCTATTTGTAGTATTGTTATGGGTGTCAAGGTACTTTA
CCAATCACTATTACAGTGGATCCTAATGGATGTGTCAATTT
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