CX300252

Overview
NameCX300252
Unique NameCX300252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length332
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_TOLAT (Biosynthetic arginine decarboxylase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=speA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.112e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEM 329
            VN S+F S+PD W I Q+FPI+P+  LD++P  RGV+ D+TCDSDG I +++ G     SLP+ EM
Sbjct:  464 VNFSLFQSLPDAWGIDQIFPIMPLSGLDQQPTRRGVIMDITCDSDGMIKEYVDGVGIENSLPMPEM 529          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHIFL (Biosynthetic arginine decarboxylase OS=Shigella flexneri GN=speA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHIF8 (Biosynthetic arginine decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALTY (Biosynthetic arginine decarboxylase OS=Salmonella typhimurium GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALTI (Biosynthetic arginine decarboxylase OS=Salmonella typhi GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALSV (Biosynthetic arginine decarboxylase OS=Salmonella schwarzengrund (strain CVM19633) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALPB (Biosynthetic arginine decarboxylase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALNS (Biosynthetic arginine decarboxylase OS=Salmonella newport (strain SL254) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALHS (Biosynthetic arginine decarboxylase OS=Salmonella heidelberg (strain SL476) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALDC (Biosynthetic arginine decarboxylase OS=Salmonella dublin (strain CT_02021853) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
The following BLAST results are available for this feature:
BLAST of CX300252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SPEA_TOLAT2.112e-1351.52Biosynthetic arginine decarboxylase OS=Tolumonas a... [more]
SPEA_SHIFL4.706e-1351.52Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHIF84.706e-1351.52Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SALTY4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALTI4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALSV4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALPB4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALNS4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALHS4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALDC4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]

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Properties
Property NameValue
Genbank descriptionC07007H10SK SaltLeaf1 Citrus clementina cDNA clone C07007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300252 ID=CX300252; Name=CX300252; organism=Citrus clementina; type=EST; length=332bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTT
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