CX300252

Overview
NameCX300252
Unique NameCX300252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length332
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALCH (Biosynthetic arginine decarboxylase OS=Salmonella choleraesuis GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SALA4 (Biosynthetic arginine decarboxylase OS=Salmonella agona (strain SL483) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ECOSM (Biosynthetic arginine decarboxylase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ECOLI (Biosynthetic arginine decarboxylase OS=Escherichia coli (strain K12) GN=speA PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ECOL6 (Biosynthetic arginine decarboxylase OS=Escherichia coli O6 GN=speA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ECO5E (Biosynthetic arginine decarboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ECO57 (Biosynthetic arginine decarboxylase OS=Escherichia coli O157:H7 GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_CHRVO (Biosynthetic arginine decarboxylase OS=Chromobacterium violaceum GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.706e-13
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEM 329
            Y  N S+F S+PD WAI Q+ PI+P+H L E+P  R VL DLTCDSDGK+ +++      +S+ +HE+
Sbjct:  454 YFCNFSVFQSLPDTWAIDQVLPIMPVHRLAEQPTRRAVLQDLTCDSDGKLKQYVDQQSIESSMSVHEV 521          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_YERPE (Biosynthetic arginine decarboxylase OS=Yersinia pestis GN=speA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.048e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+
Sbjct:  487 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDKPPERRAVLLDITCDSDGTIDHYIDGDGVATTMPM 550          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_KLEP3 (Biosynthetic arginine decarboxylase OS=Klebsiella pneumoniae (strain 342) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.369e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   36 FKDGTLGIEQLATVDGL----CDFVAKEIGASDPVRT-------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +  GT  +++ A  + L    C  V K++  S+                  +VN S+F S+PD W I QLFP++P+  L++ P  R VL D+TCDSDG ID ++ G    T++P+ E
Sbjct:  409 YSSGTFNLQERAWAEQLYLNMCHEVQKQLDPSNRAHRPIIDELQERMADKIYVNFSLFQSMPDAWGIDQLFPVMPLEGLNKSPERRAVLLDITCDSDGAIDHYVDGDGIATTMPMPE 525          
The following BLAST results are available for this feature:
BLAST of CX300252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SPEA_SALCH4.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALA44.706e-1351.52Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_ECOSM4.706e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECOLI4.706e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECOL64.706e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECO5E4.706e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECO574.706e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_CHRVO4.706e-1348.53Biosynthetic arginine decarboxylase OS=Chromobacte... [more]
SPEA_YERPE1.048e-1251.56Biosynthetic arginine decarboxylase OS=Yersinia pe... [more]
SPEA_KLEP31.369e-1234.19Biosynthetic arginine decarboxylase OS=Klebsiella ... [more]

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Properties
Property NameValue
Genbank descriptionC07007H10SK SaltLeaf1 Citrus clementina cDNA clone C07007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300252 ID=CX300252; Name=CX300252; organism=Citrus clementina; type=EST; length=332bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTT
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