CX300270

Overview
NameCX300270
Unique NameCX300270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_XENLA (Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  +E+L L  N +K LP  IGNL KL+ELD+  N+LES+   + +   L+KL + NN                        L  LP  IG LE LE+L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  419 LVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 567          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_RAT (Leucine-rich repeat protein SHOC-2 OS=Rattus norvegicus GN=Shoc2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  LE+L L  N +K LP  +GNL KL+ELD+  N+LES+   + +   L+KL + NN                        L  LP  IG LE LE+L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_PONAB (Leucine-rich repeat protein SHOC-2 OS=Pongo abelii GN=SHOC2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  LE+L L  N +K LP  +GNL KL+ELD+  N+LES+   + +   L+KL + NN                        L  LP  IG LE LE+L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_HUMAN (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  LE+L L  N +K LP  +GNL KL+ELD+  N+LES+   + +   L+KL + NN                        L  LP  IG LE LE+L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_BOVIN (Leucine-rich repeat protein SHOC-2 OS=Bos taurus GN=SHOC2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  LE+L L  N +K LP  +GNL KL+ELD+  N+LES+   + +   L+KL + NN                        L  LP  IG LE LE+L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEEL (Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.943e-13
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLR-VFRTDETPLEVPPRQVA 350
            LEIL L  N++K LP  IGNL KL+ELD+  NELE++   + F   L KL V +N   +  LPRSIGNL  L+ L + ++ +  +P+    L  L+ ++  D + L   P ++A
Sbjct:  400 LEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQSN--KILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLPFELA 511          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH1_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.149e-13
Identity = 39/124 (31.45%), Postives = 74/124 (59.68%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L++L    N++  LP  IG L +L ELDVS NE+ ++ + +    SL++LNV  N+  L+ LP+ + +L ++ + D S +++ ++P  FR + +L+V   +  PL+ PP Q+   G   + +++
Sbjct:  167 LKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNY--LKVLPQELVDLPLV-KFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYL 287          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEBR (Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae GN=soc-2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.725e-13
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLR-VFRTDETPLEVPPRQVA 350
            LEIL L  N++K LP  IGNL KL+ELD+  NELE++   + F   L KL V +N   +  LPRSIGNL  L+ L + ++ +  +P+    L  L+ ++  D + L   P ++A
Sbjct:  400 LEILVLSNNQLKKLPNQIGNLKKLRELDLEENELETVPTEIGFLQHLTKLWVQSN--KIVTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLPFELA 511          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: MFHA1_HUMAN (Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTK-LKELDVSFNELESITENLCFAV-SLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGA 362
            L  L +L L  NR   LP  +  L   L ELDVS N L ++   +  A+  L+KLN+ +N   L ALP  +G L  LE+LD+S +++  LPDS   LS+LR    D   L   PRQ+ +L A
Sbjct:   86 LGSLRVLVLRRNRFARLPPAVAELGHHLTELDVSHNRLTALGAEVVSALRELRKLNLSHN--QLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLLQLVA 205          

HSP 2 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGA 362
            L  L L +N++  LP  +G L  L+ELDVSFN L  + ++L     L+ L+V +N   L A PR +  L  LE+LD+S +++R LP+    L  L++       L   P    +L +
Sbjct:  137 LRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDHN--QLTAFPRQLLQLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPAGFCELAS 251          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH1_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Mus musculus GN=Lrch1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 39/124 (31.45%), Postives = 73/124 (58.87%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L++L    N++  LP  IG L +L ELDVS NE+ ++ + +    SL++LNV  N+  L+ LP  + +L ++ + D S +++ ++P  FR + +L+V   +  PL+ PP Q+   G   + +++
Sbjct:  157 LKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNY--LKVLPPELVDLPLV-KFDFSCNKVLVIPVCFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYL 277          
The following BLAST results are available for this feature:
BLAST of CX300270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
SHOC2_XENLA3.019e-1333.56Leucine-rich repeat protein SHOC-2 OS=Xenopus laev... [more]
SHOC2_RAT3.019e-1333.56Leucine-rich repeat protein SHOC-2 OS=Rattus norve... [more]
SHOC2_PONAB3.019e-1333.56Leucine-rich repeat protein SHOC-2 OS=Pongo abelii... [more]
SHOC2_HUMAN3.019e-1333.56Leucine-rich repeat protein SHOC-2 OS=Homo sapiens... [more]
SHOC2_BOVIN3.019e-1333.56Leucine-rich repeat protein SHOC-2 OS=Bos taurus G... [more]
SHOC2_CAEEL3.943e-1339.47Leucine-rich repeat protein soc-2 OS=Caenorhabditi... [more]
LRCH1_HUMAN5.149e-1331.45Leucine-rich repeat and calponin homology domain-c... [more]
SHOC2_CAEBR6.725e-1339.47Leucine-rich repeat protein soc-2 OS=Caenorhabditi... [more]
MFHA1_HUMAN8.783e-1340.16Malignant fibrous histiocytoma-amplified sequence ... [more]
LRCH1_MOUSE1.147e-1231.45Leucine-rich repeat and calponin homology domain-c... [more]

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Properties
Property NameValue
Genbank descriptionC07008B09SK NTLeaf1 Citrus clementina cDNA clone C07008B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300270 ID=CX300270; Name=CX300270; organism=Citrus clementina; type=EST; length=439bp
AGCTCGAGTGCTTGGAGATTCTTACTTTGCATTATAATAGAATAAAAGGG
TTACCGACAACTATAGGTAACCTTACCAAGTTAAAGGAGCTTGATGTAAG
CTTCAATGAGCTTGAGTCAATCACCGAGAACCTGTGCTTTGCGGTAAGTC
TCAAGAAATTGAATGTAGGGAACAACTTTGCTGATCTTAGAGCCTTGCCA
AGGTCAATTGGAAATCTTGAGATGCTGGAACAGTTGGACATAAGTGATGA
TCAAATAAGGATTTTACCAGATTCTTTCAGGTTGTTGTCAAAATTGAGAG
TTTTTCGCACCGATGAGACTCCTTTAGAAGTTCCACCAAGGCAAGTTGCT
AAATTGGGTGCTCAGGCTGTTGTCCAGTTCATGGTAGATCTTGTTGCTAA
TAGGGATGCTAAATCTCAACCAGTAGACGAGGAGAAGAA
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