CX300270
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_XENLA (Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13 Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L +E+L L N +K LP IGNL KL+ELD+ N+LES+ + + L+KL + NN L LP IG LE LE+L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 419 LVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 567
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_RAT (Leucine-rich repeat protein SHOC-2 OS=Rattus norvegicus GN=Shoc2 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13 Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L LE+L L N +K LP +GNL KL+ELD+ N+LES+ + + L+KL + NN L LP IG LE LE+L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_PONAB (Leucine-rich repeat protein SHOC-2 OS=Pongo abelii GN=SHOC2 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13 Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L LE+L L N +K LP +GNL KL+ELD+ N+LES+ + + L+KL + NN L LP IG LE LE+L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_HUMAN (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13 Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L LE+L L N +K LP +GNL KL+ELD+ N+LES+ + + L+KL + NN L LP IG LE LE+L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_BOVIN (Leucine-rich repeat protein SHOC-2 OS=Bos taurus GN=SHOC2 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13 Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L LE+L L N +K LP +GNL KL+ELD+ N+LES+ + + L+KL + NN L LP IG LE LE+L ++D+ + LP L SKL + + PL P Q+ G ++QF+ Sbjct: 424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEEL (Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 3.943e-13 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLR-VFRTDETPLEVPPRQVA 350 LEIL L N++K LP IGNL KL+ELD+ NELE++ + F L KL V +N + LPRSIGNL L+ L + ++ + +P+ L L+ ++ D + L P ++A Sbjct: 400 LEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQSN--KILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLPFELA 511
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH1_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 5.149e-13 Identity = 39/124 (31.45%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L++L N++ LP IG L +L ELDVS NE+ ++ + + SL++LNV N+ L+ LP+ + +L ++ + D S +++ ++P FR + +L+V + PL+ PP Q+ G + +++ Sbjct: 167 LKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNY--LKVLPQELVDLPLV-KFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYL 287
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEBR (Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae GN=soc-2 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.725e-13 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLR-VFRTDETPLEVPPRQVA 350 LEIL L N++K LP IGNL KL+ELD+ NELE++ + F L KL V +N + LPRSIGNL L+ L + ++ + +P+ L L+ ++ D + L P ++A Sbjct: 400 LEILVLSNNQLKKLPNQIGNLKKLRELDLEENELETVPTEIGFLQHLTKLWVQSN--KIVTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLPFELA 511
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: MFHA1_HUMAN (Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13 Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 3 LECLEILTLHYNRIKGLPTTIGNLTK-LKELDVSFNELESITENLCFAV-SLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGA 362 L L +L L NR LP + L L ELDVS N L ++ + A+ L+KLN+ +N L ALP +G L LE+LD+S +++ LPDS LS+LR D L PRQ+ +L A Sbjct: 86 LGSLRVLVLRRNRFARLPPAVAELGHHLTELDVSHNRLTALGAEVVSALRELRKLNLSHN--QLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLLQLVA 205 HSP 2 Score: 66.6254 bits (161), Expect = 4.820e-11 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGA 362 L L L +N++ LP +G L L+ELDVSFN L + ++L L+ L+V +N L A PR + L LE+LD+S +++R LP+ L L++ L P +L + Sbjct: 137 LRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDHN--QLTAFPRQLLQLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPAGFCELAS 251
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH1_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Mus musculus GN=Lrch1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12 Identity = 39/124 (31.45%), Postives = 73/124 (58.87%), Query Frame = 3 Query: 12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383 L++L N++ LP IG L +L ELDVS NE+ ++ + + SL++LNV N+ L+ LP + +L ++ + D S +++ ++P FR + +L+V + PL+ PP Q+ G + +++ Sbjct: 157 LKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNY--LKVLPPELVDLPLV-KFDFSCNKVLVIPVCFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYL 277 The following BLAST results are available for this feature:
BLAST of CX300270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300270 ID=CX300270; Name=CX300270; organism=Citrus clementina; type=EST; length=439bpback to top |