CX300334

Overview
NameCX300334
Unique NameCX300334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP  NNAWAYATNF PGK
Sbjct:  200 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.668e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query:   19 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            DDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ DPV NNAWAYATNFVPGK
Sbjct:  200 DDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FA++KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  200 ADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK
Sbjct:  203 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  201 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of CX300334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB27_TOBAC3.574e-2987.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_POLMU3.574e-2989.39Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_PETSP4.668e-2987.88Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB48_MAIZE6.097e-2989.23Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2G_SOLLC6.097e-2987.88Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB29_MAIZE6.097e-2987.88Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA6.097e-2987.88Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_TOBAC6.097e-2987.88Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP6.097e-2987.88Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL6.097e-2987.88Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07008H05SK NTLeaf1 Citrus clementina cDNA clone C07008H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300334 ID=CX300334; Name=CX300334; organism=Citrus clementina; type=EST; length=389bp
CCCCGGGCTGCAGGGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGT
CAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCT
TTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGAC
CACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTT
TGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCT
GTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATG
GACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGA
TCTTTTATTTCCATCAAAAAAAAAAAAAAAAACTCGAGG
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