CX300349

Overview
NameCX300349
Unique NameCX300349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.198e-37
Identity = 69/118 (58.47%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    7 LRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYT 360
            LRL+F  +      TLP G++ Q+ V+EF+ITFYLMFVI  VATD++A+G +AG+AVG T++LNV+FAGP++GASMNPARS+GPA+V S+Y  LW+YI+ P  GA AGAW Y+++R T
Sbjct:  151 LRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAYSLIRLT 268          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36
Identity = 70/120 (58.33%), Postives = 92/120 (76.67%), Query Frame = 1
Query:   28 KQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITK 387
            K D + GT P+ SN  +FVMEFI TF LMFVIS VATD RA G  AG+A+G+T++L+++F+GPI+GASMNPARSLGPA++   YK LW+YIV+P +GA +GAW Y ++R T K   EI +
Sbjct:  152 KGDVYVGTYPSNSNTTSFVMEFIATFNLMFVISAVATDKRATGSFAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWGCYKDLWLYIVSPVIGALSGAWTYGLLRSTKKSYSEIIR 271          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP21_ARATH (Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 1
Query:    4 TLRLLFQ-------EKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSAS 396
            TLRLLF        +K D F G+ P+GS++QAFVMEFIIT +LM V+  V T  R   EL GL +G+TV LNV+FAG ++GASMNPARS+GPA+V   YKG+WIY++AP LGA +GA ++ M+        E +K+ S
Sbjct:  141 TLRLLFDLNNDVCSKKHDVFLGSSPSGSDLQAFVMEFIITGFLMLVVCAVTTTKRTTEELEGLIIGATVTLNVIFAGEVSGASMNPARSIGPALVWGCYKGIWIYLLAPTLGAVSGALIHKMLPSIQNAEPEFSKTGS 278          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTD 363
            T+P+ S  QAF +EFIITF L+FV++ VATD RA+GELAG+AVG+TV+LN++ AGP TG SMNP R+LGPA+ S  Y+ LW+Y+VAP LGA +GA VY  V+  D
Sbjct:  186 TIPSVSLGQAFALEFIITFILLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLND 290          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.301e-30
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   55 PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 366
            P  S  QAF  EFIITF L+FV++ VATD RA+GELAG+AVG+ V LN++ AGP TG SMNP R+LGPA+ +  Y+ LWIY++AP LGA AGA VY  V+  D+
Sbjct:  195 PTISTAQAFFTEFIITFNLLFVVTAVATDTRAVGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVYTAVKLRDE 298          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.786e-30
Identity = 59/119 (49.58%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 405
            T P+G +  A ++E ++TF +MFV   VATD+RA+GELAGLAVGS V +  +FAGP++G SMNPAR+L PA+ S+ + GLWIY + P +G  +GAWVY  +R+ + P  + T+  S  K
Sbjct:  160 TTPSGPHWHALLIEIVVTFNMMFVTCAVATDSRAVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVIGTLSGAWVYTYIRFEEAPAAKDTQRLSSFK 278          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.459e-30
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKP 369
            T P G +  A V+E ++TF +MFV   VATD+RA+GELAGLAVGS V +  +FAGP++G SMNPAR+L PA+ S+ Y GLWIY + P +G  +GAWVY  +R+ + P
Sbjct:  160 TTPTGPHWHALVIEIVVTFNMMFVTCAVATDSRAVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVYTGLWIYFLGPVVGTLSGAWVYTYIRFEEAP 266          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.102e-29
Identity = 59/106 (55.66%), Postives = 81/106 (76.42%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 366
            T+P     QAF +EFII+F LMFV++ VATD RA+GELAG+AVG+TV+LN++ AGP T ASMNP R+LGPAI ++ Y+ +W+Y+ AP LGA  GA  Y +V+  ++
Sbjct:  188 TVPTVGLSQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEE 293          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.102e-29
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   34 DQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 405
            D    T P G +  + V+E I+TF +MFV   VATD RA+GELAGLAVGS V +  +FAG I+G SMNPAR+LGPA+ S+++ GLWIY + P +G  +GAW Y  +R+ D P    ++  S  K
Sbjct:  152 DVIGTTTPVGPHWHSLVVEVIVTFNMMFVTLAVATDTRAVGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNKFDGLWIYFLGPVMGTLSGAWTYTFIRFEDTPKEGSSQKLSSFK 275          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.205e-29
Identity = 60/101 (59.41%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   64 SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 366
            S  QAF  EFII+F L+FV++ VATD RA+GELAG+AVG+ V LN++ AGP TG SMNP R+LGPA+ +  Y+ LWIY++AP LGA AGA VY  V+  D+
Sbjct:  189 STAQAFFTEFIISFNLLFVVTAVATDTRAVGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLLAPTLGALAGASVYKAVKLRDE 289          
The following BLAST results are available for this feature:
BLAST of CX300349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NIP14_ORYSJ3.198e-3758.47Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
NIP31_ARATH3.536e-3658.33Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NIP21_ARATH1.065e-3252.17Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1... [more]
NIP51_ARATH5.284e-3260.95Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP31_ORYSJ1.301e-3059.62Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
NIP22_MAIZE3.786e-3049.58Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
NIP22_ORYSJ6.459e-3054.21Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP61_ARATH1.102e-2955.66Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
NIP21_ORYSJ1.102e-2949.19Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
NIP31_MAIZE3.205e-2959.41Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07009B01SK SaltLeaf1 Citrus clementina cDNA clone C07009B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300349 ID=CX300349; Name=CX300349; organism=Citrus clementina; type=EST; length=622bp
GGAACACTTCGGTTACTGTTTCAAGAAAAACAGGATCAGTTCGCAGGAAC
ACTTCCAGCTGGCTCCAATATTCAGGCGTTTGTGATGGAGTTCATTATCA
CCTTCTACCTCATGTTTGTCATATCCGGTGTCGCCACCGATAACAGAGCT
ATAGGCGAGCTTGCAGGTCTCGCTGTTGGTTCCACAGTGCTGCTTAATGT
CATGTTTGCCGGGCCAATAACAGGAGCATCAATGAACCCAGCAAGAAGCT
TGGGGCCAGCAATTGTATCAAGTCAGTACAAGGGTTTGTGGATATACATT
GTGGCGCCACCTCTTGGGGCAACTGCAGGGGCTTGGGTTTACAACATGGT
GAGATATACTGACAAGCCTTTGCGAGAGATTACAAAGAGTGCCTCTTTCT
TAAAGGGAGCTGGACGTTCTTAATCTCAGATGATTGGATTTGTTCCAATA
GTTAATAATTGATGGCTTCTGATTTGAGATTAGATGCTAATTCTGTGATT
TGTGTAAACTACAAGAGCCAAGAGGAGGACGCTGTTTTTTTTTTCAATGC
AAATCTTAACTATGTGTGAATGGCATGTACTGGACTTCAAAATGAAATGA
ACTATAATATATTAAAAAAAAA
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