CX300349
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13 Identity = 50/124 (40.32%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 46 GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGA 411 G L AG + ++E IITF L+F I R G +A LA+G +V + +FA TGASMNPARS GPA++ + WIY V P +GA +Y V D L+ K A F K A Sbjct: 152 GNLTAGHGL---LVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGAVLAGALYEYVFCPDVELKRRLKEA-FSKAA 270
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12 Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 70 IQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYN---MVRYTDKPL 372 +Q VME I+TF L+FV + D R+ + + L G V N + G TGASMNPARS GPA+ + + W+Y + P LG + +VY MV T +PL Sbjct: 148 MQGLVMEVILTFSLLFVTYAMILDPRSQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12 Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 46 GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGA 411 G L AG + ++E IITF L+F I R G +A LA+G +V + +FA TGASMNPARS GPA++ ++ WIY V P +GA +Y V D + K A F K A Sbjct: 152 GNLTAGHGL---LVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPDVEFKRRFKEA-FSKAA 270
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12 Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 1 Query: 76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351 A V E ++TF L++ + A D + IG +A LA+G V N++ G GASMNPA S GPA+VS + W+Y V P +GA A VY+ + Sbjct: 144 AVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTI 237
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12 Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 64 SNIQAFVMEFIITFYLMFVISGVATDNR----AIGEL-AGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 366 S +Q VME I+TF L+FV + D R AIG L GL VG+ N + G TGASMNPARS GPA+ + + W+Y + P LG +VY + K Sbjct: 144 SPMQGLVMEVILTFSLLFVTYAMILDPRSQVRAIGPLLTGLIVGA----NSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQK 245
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12 Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 76 AFVMEFIITFYLMFVISGVATDNRAIG-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351 A ++E ++TF L++ + A D R+ G ++A LA+G N++ GP GA+MNPAR+ GPA+V ++ W+Y + P +GA +Y V Sbjct: 151 ALLLEVVMTFGLVYTVYATAVDRRSGGGDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFV 243
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12 Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 73 QAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351 +A V+E ++TF L++ + A D + ++G +A +A+G V N++ G GASMNPA S GPA+VS ++ W+Y V P +G +Y ++ Sbjct: 142 EALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIGGGLAGVIYEVL 236
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12 Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1 Query: 76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351 A V+E ++TF L++ + A D + IG +A +A+G V N++ G TGASMNPA S GPA+VS + W+Y P +G VY ++ Sbjct: 143 ALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVL 236
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12 Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1 Query: 76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351 A V+E ++TF L++ + A D + IG +A +A+G V N++ G TGASMNPA S GPA+VS + W+Y P +G VY ++ Sbjct: 142 ALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVL 235
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12 Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1 Query: 76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKP 369 A V E ++TF L++ + A D + +G +A +A+G V N++ G GASMNPA S GPA+V+ + W+Y + P +GA A +Y+++ +P Sbjct: 144 AVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVGAAIAALIYDIIFIGQRP 243 The following BLAST results are available for this feature:
BLAST of CX300349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300349 ID=CX300349; Name=CX300349; organism=Citrus clementina; type=EST; length=622bpback to top |