CX300349

Overview
NameCX300349
Unique NameCX300349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13
Identity = 50/124 (40.32%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   46 GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGA 411
            G L AG  +   ++E IITF L+F I       R    G +A LA+G +V +  +FA   TGASMNPARS GPA++   +   WIY V P +GA     +Y  V   D  L+   K A F K A
Sbjct:  152 GNLTAGHGL---LVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGAVLAGALYEYVFCPDVELKRRLKEA-FSKAA 270          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   70 IQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYN---MVRYTDKPL 372
            +Q  VME I+TF L+FV   +  D R+ +  +  L  G  V  N +  G  TGASMNPARS GPA+ +  +   W+Y + P LG +   +VY    MV  T +PL
Sbjct:  148 MQGLVMEVILTFSLLFVTYAMILDPRSQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   46 GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGA 411
            G L AG  +   ++E IITF L+F I       R    G +A LA+G +V +  +FA   TGASMNPARS GPA++   ++  WIY V P +GA     +Y  V   D   +   K A F K A
Sbjct:  152 GNLTAGHGL---LVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPDVEFKRRFKEA-FSKAA 270          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            A V E ++TF L++ +   A D +   IG +A LA+G  V  N++  G   GASMNPA S GPA+VS  +   W+Y V P +GA   A VY+ +
Sbjct:  144 AVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   64 SNIQAFVMEFIITFYLMFVISGVATDNR----AIGEL-AGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 366
            S +Q  VME I+TF L+FV   +  D R    AIG L  GL VG+    N +  G  TGASMNPARS GPA+ +  +   W+Y + P LG     +VY  +    K
Sbjct:  144 SPMQGLVMEVILTFSLLFVTYAMILDPRSQVRAIGPLLTGLIVGA----NSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQK 245          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   76 AFVMEFIITFYLMFVISGVATDNRAIG-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            A ++E ++TF L++ +   A D R+ G ++A LA+G     N++  GP  GA+MNPAR+ GPA+V   ++  W+Y + P +GA     +Y  V
Sbjct:  151 ALLLEVVMTFGLVYTVYATAVDRRSGGGDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFV 243          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   73 QAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            +A V+E ++TF L++ +   A D +  ++G +A +A+G  V  N++  G   GASMNPA S GPA+VS  ++  W+Y V P +G      +Y ++
Sbjct:  142 EALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            A V+E ++TF L++ +   A D +   IG +A +A+G  V  N++  G  TGASMNPA S GPA+VS  +   W+Y   P +G      VY ++
Sbjct:  143 ALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            A V+E ++TF L++ +   A D +   IG +A +A+G  V  N++  G  TGASMNPA S GPA+VS  +   W+Y   P +G      VY ++
Sbjct:  142 ALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   76 AFVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKP 369
            A V E ++TF L++ +   A D +   +G +A +A+G  V  N++  G   GASMNPA S GPA+V+  +   W+Y + P +GA   A +Y+++    +P
Sbjct:  144 AVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVGAAIAALIYDIIFIGQRP 243          
The following BLAST results are available for this feature:
BLAST of CX300349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
AQP4_MOUSE7.174e-1340.32Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
TIP42_MAIZE1.224e-1240.00Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
AQP4_HUMAN1.224e-1239.52Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
TIP13_ARATH2.726e-1241.49Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP41_MAIZE3.560e-1241.51Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP32_ORYSJ3.560e-1236.56Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP11_ORYSJ3.560e-1235.79Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR4.650e-1238.30Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA4.650e-1238.30Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP12_ORYSJ4.650e-1235.00Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC07009B01SK SaltLeaf1 Citrus clementina cDNA clone C07009B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300349 ID=CX300349; Name=CX300349; organism=Citrus clementina; type=EST; length=622bp
GGAACACTTCGGTTACTGTTTCAAGAAAAACAGGATCAGTTCGCAGGAAC
ACTTCCAGCTGGCTCCAATATTCAGGCGTTTGTGATGGAGTTCATTATCA
CCTTCTACCTCATGTTTGTCATATCCGGTGTCGCCACCGATAACAGAGCT
ATAGGCGAGCTTGCAGGTCTCGCTGTTGGTTCCACAGTGCTGCTTAATGT
CATGTTTGCCGGGCCAATAACAGGAGCATCAATGAACCCAGCAAGAAGCT
TGGGGCCAGCAATTGTATCAAGTCAGTACAAGGGTTTGTGGATATACATT
GTGGCGCCACCTCTTGGGGCAACTGCAGGGGCTTGGGTTTACAACATGGT
GAGATATACTGACAAGCCTTTGCGAGAGATTACAAAGAGTGCCTCTTTCT
TAAAGGGAGCTGGACGTTCTTAATCTCAGATGATTGGATTTGTTCCAATA
GTTAATAATTGATGGCTTCTGATTTGAGATTAGATGCTAATTCTGTGATT
TGTGTAAACTACAAGAGCCAAGAGGAGGACGCTGTTTTTTTTTTCAATGC
AAATCTTAACTATGTGTGAATGGCATGTACTGGACTTCAAAATGAAATGA
ACTATAATATATTAAAAAAAAA
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