CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ANAVT (50S ribosomal protein L18 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplR PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34 Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+RE + RH R+R K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTL SAST++ + L +SG E S ++G++IA LEKGITKV FDRGG YHGRI+ALA+AARE GL F Sbjct: 4 TRRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPEVKSSL--ASGANCEASSQIGKLIAVRSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ANASP (50S ribosomal protein L18 OS=Anabaena sp. (strain PCC 7120) GN=rplR PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34 Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+RE + RH R+R K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTLA+AST++ + L +SG E S ++G++IA LEKGITKV FDRGG YHGRI+ALA+AARE GL F Sbjct: 4 TRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPELKSSL--ASGSNCEASAQIGKLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 9.843e-34 Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E S I+ +KKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNP2 (50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplR PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.679e-33 Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+++ RH RIR++++GT +RPRL VFRS+KH+Y QVIDD K HTL +AST+ K + EL +SG I S VG +IAK LEKGITKV FDRGG YHGR++ALADAARE GL F Sbjct: 4 TRKQLTQRRHFRIRRRVEGTGDRPRLAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGEL--ASGGNISASTAVGNLIAKRALEKGITKVVFDRGGNLYHGRVKALADAAREAGLDF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CALS8 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplR PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.740e-33 Identity = 68/118 (57.63%), Postives = 89/118 (75.42%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 + E R RH RIRKK+ GT ERPRLCV++S K++Y Q+IDD K HTL +AS+++ I L +S +IE ++ +G +IA+ EKGITKV FDRGGYPYHGR++ALADAARE GL+F Sbjct: 7 RNEKRLIRHKRIRKKVFGTAERPRLCVYKSLKYIYAQIIDDEKGHTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRVKALADAAREAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AQUAE (50S ribosomal protein L18 OS=Aquifex aeolicus GN=rplR PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 4.885e-33 Identity = 69/122 (56.56%), Postives = 85/122 (69.67%), Query Frame = 2 Query: 83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R +T+RE R RH RIRKK+ GTPERPRLCV+RS KH Y Q+IDDT HTL SAST+ G +I+ ++ V E+IA+ LEKGI KV FDRGG+ YHG+I+A AD RE GL+F Sbjct: 3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLKHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLEF 124
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32 Identity = 68/120 (56.67%), Postives = 92/120 (76.67%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R+++E R RH RIRKKI GTPERPRL V++S +++Y Q+IDDTK HTL +AS+++K + +L S IE +K VGE+IAK LEKGI +V FDRGG+ YHG+++ALAD+AR GL+F Sbjct: 5 RSRKELRRIRHLRIRKKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKRVVFDRGGFLYHGKVKALADSARAAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32 Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R+++E R RH RIRKKI GT ERPRL V++S +++Y Q+IDDTK HTL SAS+++K I +L S IE +K VGE+IAK LEKGI KV FDRGG+ YHG+++ALAD+AR GL+F Sbjct: 5 RSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKKVVFDRGGFLYHGKVKALADSARAAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AQUPY (50S ribosomal protein L18 OS=Aquifex pyrophilus GN=rplR PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32 Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2 Query: 83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R +T+RE R RH RIRKK+ GTPERPRLCV+RS H Y Q+IDDT HTL SAST+ G +I+ ++ V E+IA+ LEKGI KV FDRGG+ YHG+I+A AD RE GL+F Sbjct: 3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLNHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLEF 124
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ACAM1 (50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC 11017) GN=rplR PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.424e-32 Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+R+ +RH R+R+K+ GT ERPRL VFRSN+H+Y QVIDD + HTLA+AST + +L SSG T + S VG+++A+ +EKGI V FDRGG YHGR++ALADAARE GL+F Sbjct: 4 TRRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAAST----VESDLKSSSGATCDASTAVGKLVAERAIEKGIKAVVFDRGGNLYHGRVKALADAAREAGLEF 118 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |