CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ANAVT (50S ribosomal protein L18 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplR PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+RE +  RH R+R K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTL SAST++  +   L  +SG   E S ++G++IA   LEKGITKV FDRGG  YHGRI+ALA+AARE GL F
Sbjct:    4 TRRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPEVKSSL--ASGANCEASSQIGKLIAVRSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ANASP (50S ribosomal protein L18 OS=Anabaena sp. (strain PCC 7120) GN=rplR PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+RE +  RH R+R K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTLA+AST++  +   L  +SG   E S ++G++IA   LEKGITKV FDRGG  YHGRI+ALA+AARE GL F
Sbjct:    4 TRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPELKSSL--ASGSNCEASAQIGKLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGLDF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.843e-34
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E    S   I+ +KKVGE++AK  LEKGI +V FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNP2 (50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplR PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.679e-33
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+++    RH RIR++++GT +RPRL VFRS+KH+Y QVIDD K HTL +AST+ K +  EL  +SG  I  S  VG +IAK  LEKGITKV FDRGG  YHGR++ALADAARE GL F
Sbjct:    4 TRKQLTQRRHFRIRRRVEGTGDRPRLAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGEL--ASGGNISASTAVGNLIAKRALEKGITKVVFDRGGNLYHGRVKALADAAREAGLDF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CALS8 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplR PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.740e-33
Identity = 68/118 (57.63%), Postives = 89/118 (75.42%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            + E R  RH RIRKK+ GT ERPRLCV++S K++Y Q+IDD K HTL +AS+++  I   L  +S  +IE ++ +G +IA+   EKGITKV FDRGGYPYHGR++ALADAARE GL+F
Sbjct:    7 RNEKRLIRHKRIRKKVFGTAERPRLCVYKSLKYIYAQIIDDEKGHTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRVKALADAAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AQUAE (50S ribosomal protein L18 OS=Aquifex aeolicus GN=rplR PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.885e-33
Identity = 69/122 (56.56%), Postives = 85/122 (69.67%), Query Frame = 2
Query:   83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R +T+RE R  RH RIRKK+ GTPERPRLCV+RS KH Y Q+IDDT  HTL SAST+            G +I+ ++ V E+IA+  LEKGI KV FDRGG+ YHG+I+A AD  RE GL+F
Sbjct:    3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLKHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLEF 124          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32
Identity = 68/120 (56.67%), Postives = 92/120 (76.67%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R+++E R  RH RIRKKI GTPERPRL V++S +++Y Q+IDDTK HTL +AS+++K +  +L   S   IE +K VGE+IAK  LEKGI +V FDRGG+ YHG+++ALAD+AR  GL+F
Sbjct:    5 RSRKELRRIRHLRIRKKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKRVVFDRGGFLYHGKVKALADSARAAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32
Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R+++E R  RH RIRKKI GT ERPRL V++S +++Y Q+IDDTK HTL SAS+++K I  +L   S   IE +K VGE+IAK  LEKGI KV FDRGG+ YHG+++ALAD+AR  GL+F
Sbjct:    5 RSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKKVVFDRGGFLYHGKVKALADSARAAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AQUPY (50S ribosomal protein L18 OS=Aquifex pyrophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2
Query:   83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R +T+RE R  RH RIRKK+ GTPERPRLCV+RS  H Y Q+IDDT  HTL SAST+            G +I+ ++ V E+IA+  LEKGI KV FDRGG+ YHG+I+A AD  RE GL+F
Sbjct:    3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLNHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLEF 124          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ACAM1 (50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC 11017) GN=rplR PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.424e-32
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+R+   +RH R+R+K+ GT ERPRL VFRSN+H+Y QVIDD + HTLA+AST    +  +L  SSG T + S  VG+++A+  +EKGI  V FDRGG  YHGR++ALADAARE GL+F
Sbjct:    4 TRRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAAST----VESDLKSSSGATCDASTAVGKLVAERAIEKGIKAVVFDRGGNLYHGRVKALADAAREAGLEF 118          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ANAVT2.590e-3459.6650S ribosomal protein L18 OS=Anabaena variabilis (... [more]
RL18_ANASP2.590e-3459.6650S ribosomal protein L18 OS=Anabaena sp. (strain ... [more]
RL18_GEOTN9.843e-3463.1650S ribosomal protein L18 OS=Geobacillus thermoden... [more]
RL18_SYNP21.679e-3359.6650S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_CALS83.740e-3357.6350S ribosomal protein L18 OS=Caldicellulosiruptor ... [more]
RL18_AQUAE4.885e-3356.5650S ribosomal protein L18 OS=Aquifex aeolicus GN=r... [more]
RL18_DICTD1.088e-3256.6750S ribosomal protein L18 OS=Dictyoglomus turgidum... [more]
RL18_DICT61.856e-3258.3350S ribosomal protein L18 OS=Dictyoglomus thermoph... [more]
RL18_AQUPY1.856e-3255.7450S ribosomal protein L18 OS=Aquifex pyrophilus GN... [more]
RL18_ACAM12.424e-3256.3050S ribosomal protein L18 OS=Acaryochloris marina ... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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