CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_FERNB (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32 Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 95 KREDRT----ARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 KREDR RH R+RKKI GTPERPRL VFRS KH+Y Q+IDDTK TL +AST++K + ++L + I +K+VG++IA+ L KGI +V FDRGG+ YHGR++ALADAARE GL+F Sbjct: 3 KREDRRQLRLVRHKRLRKKIFGTPERPRLAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTW--NITAAKEVGKLIAERALAKGIKEVVFDRGGFKYHGRVKALADAAREAGLKF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32 Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +K R RH+R+R K+ GTPERPRL VFRSNKH+Y QVIDD TL SAST+ K + E +G + KVGE++AK EKGIT V FDRGGY YHGR++ALADAARE GL+F Sbjct: 6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE----NGSDTAAAAKVGELVAKRASEKGITNVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STACT (50S ribosomal protein L18 OS=Staphylococcus carnosus (strain TM300) GN=rplR PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32 Identity = 67/118 (56.78%), Postives = 85/118 (72.03%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R + GT ++PRL V+RSNKH+Y Q+IDDTK TL AST K +E +G +E+S KVGE IAK +KGIT++ FDRGGY YHGR++ALADAARE GLQF Sbjct: 7 KNKVRLKRHARVRSNLSGTAQKPRLNVYRSNKHIYAQIIDDTKGVTLVQASTQDKDFENE----TGSKVELSSKVGEAIAKKAADKGITEIVFDRGGYLYHGRVKALADAARENGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAA5 (50S ribosomal protein L18 OS=Cyanothece sp. (strain ATCC 51142) GN=rplR PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32 Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T++E RH RIR+K+ GTP+ PRL VFRSN H+Y Q+IDD HTLA+AST++ + + L SSG T E S VG+++A+ + KGI +V FDRGG YHGR++ALADAARE GLQF Sbjct: 4 TRKESLKRRHRRIRRKVSGTPDCPRLAVFRSNHHIYAQIIDDVAQHTLAAASTLEPDLRNSL--SSGATCEASAAVGKLVAERGMAKGIEQVVFDRGGNLYHGRVKALADAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THERP (50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 7.054e-32 Identity = 65/114 (57.02%), Postives = 84/114 (73.68%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH R+R K+ GTPERPRL VFRSNKH+Y Q+IDDT+ HTL +AST++K + + P IE ++ VG+++ + L KGIT+V FDRGGY YHGR++ALAD AR GLQF Sbjct: 12 RKRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFP-DPHPKIEEARIVGQVVGERALAKGITRVVFDRGGYKYHGRVKALADGARAAGLQF 124
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAS1 (50S ribosomal protein L18 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplR PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32 Identity = 66/118 (55.93%), Postives = 86/118 (72.88%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R K+ GT E+PRL ++RSNKH+Y QVIDD TLA AST +K +++E SG +E+S KVGE +AK EKG+ + FDRGGY YHGR++ALADAARE GL+F Sbjct: 7 KNKVRLKRHARVRNKLAGTAEKPRLNIYRSNKHIYAQVIDDVSGKTLAQASTQEKDLANE----SGSKVELSAKVGETVAKRASEKGVKTIVFDRGGYLYHGRVKALADAARENGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_NOSP7 (50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplR PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32 Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+RE + RH R+R K+ G+PERPRL VFRSN+H+Y QVIDD++ T+ +AST++ + L +SG + S +VG++IA LEKGITKV FDRGG YHGR++ALADAARE GL F Sbjct: 4 TRRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSSL--ASGANRDASVQVGKLIAVRSLEKGITKVVFDRGGNLYHGRVKALADAAREAGLDF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOD6 (50S ribosomal protein L18 OS=Clostridium difficile (strain 630) GN=rplR PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31 Identity = 64/118 (54.24%), Postives = 87/118 (73.73%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K +R RH R+R+KI GT +RPRLCVFRS ++Y Q+IDDTK TL +AS+++ + ++++ E +KKVGE++AK +EKGIT+V FDRGGY YHGRIQ LA+ ARE GL+F Sbjct: 7 KNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK--EAAKKVGELVAKKAVEKGITEVVFDRGGYLYHGRIQELAEGAREAGLKF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLAD (50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplR PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31 Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RT RE R RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST++K +S P + +++ VG++IA+ L+ GITKV FDRGGY YHGR++ALA+AARE GL F Sbjct: 4 RTPRELRLRRHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGLNF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_TRIEI (50S ribosomal protein L18 OS=Trichodesmium erythraeum (strain IMS101) GN=rplR PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31 Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+++ RH R+RKK+ GT ERPRL VFRSN H+Y QVIDDTK HTL +AST++ + + SG + S ++G++IA+ LEKGI KV FDRGG YHGR++ALA+AARE GL F Sbjct: 4 TRKDSIIKRHRRVRKKVFGTSERPRLSVFRSNMHIYAQVIDDTKQHTLVAASTLEAEVKSTI--KSGANCDASIQIGKLIAQRSLEKGIEKVVFDRGGNLYHGRVKALAEAAREAGLDF 120 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |