CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_FERNB (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   95 KREDRT----ARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            KREDR      RH R+RKKI GTPERPRL VFRS KH+Y Q+IDDTK  TL +AST++K + ++L  +    I  +K+VG++IA+  L KGI +V FDRGG+ YHGR++ALADAARE GL+F
Sbjct:    3 KREDRRQLRLVRHKRLRKKIFGTPERPRLAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTW--NITAAKEVGKLIAERALAKGIKEVVFDRGGFKYHGRVKALADAAREAGLKF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +K   R  RH+R+R K+ GTPERPRL VFRSNKH+Y QVIDD    TL SAST+ K  + E    +G     + KVGE++AK   EKGIT V FDRGGY YHGR++ALADAARE GL+F
Sbjct:    6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE----NGSDTAAAAKVGELVAKRASEKGITNVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STACT (50S ribosomal protein L18 OS=Staphylococcus carnosus (strain TM300) GN=rplR PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.135e-32
Identity = 67/118 (56.78%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R  + GT ++PRL V+RSNKH+Y Q+IDDTK  TL  AST  K   +E    +G  +E+S KVGE IAK   +KGIT++ FDRGGY YHGR++ALADAARE GLQF
Sbjct:    7 KNKVRLKRHARVRSNLSGTAQKPRLNVYRSNKHIYAQIIDDTKGVTLVQASTQDKDFENE----TGSKVELSSKVGEAIAKKAADKGITEIVFDRGGYLYHGRVKALADAARENGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAA5 (50S ribosomal protein L18 OS=Cyanothece sp. (strain ATCC 51142) GN=rplR PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T++E    RH RIR+K+ GTP+ PRL VFRSN H+Y Q+IDD   HTLA+AST++  + + L  SSG T E S  VG+++A+  + KGI +V FDRGG  YHGR++ALADAARE GLQF
Sbjct:    4 TRKESLKRRHRRIRRKVSGTPDCPRLAVFRSNHHIYAQIIDDVAQHTLAAASTLEPDLRNSL--SSGATCEASAAVGKLVAERGMAKGIEQVVFDRGGNLYHGRVKALADAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THERP (50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.054e-32
Identity = 65/114 (57.02%), Postives = 84/114 (73.68%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH R+R K+ GTPERPRL VFRSNKH+Y Q+IDDT+ HTL +AST++K + +       P IE ++ VG+++ +  L KGIT+V FDRGGY YHGR++ALAD AR  GLQF
Sbjct:   12 RKRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFP-DPHPKIEEARIVGQVVGERALAKGITRVVFDRGGYKYHGRVKALADGARAAGLQF 124          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAS1 (50S ribosomal protein L18 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32
Identity = 66/118 (55.93%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R K+ GT E+PRL ++RSNKH+Y QVIDD    TLA AST +K +++E    SG  +E+S KVGE +AK   EKG+  + FDRGGY YHGR++ALADAARE GL+F
Sbjct:    7 KNKVRLKRHARVRNKLAGTAEKPRLNIYRSNKHIYAQVIDDVSGKTLAQASTQEKDLANE----SGSKVELSAKVGETVAKRASEKGVKTIVFDRGGYLYHGRVKALADAARENGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_NOSP7 (50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+RE +  RH R+R K+ G+PERPRL VFRSN+H+Y QVIDD++  T+ +AST++  +   L  +SG   + S +VG++IA   LEKGITKV FDRGG  YHGR++ALADAARE GL F
Sbjct:    4 TRRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSSL--ASGANRDASVQVGKLIAVRSLEKGITKVVFDRGGNLYHGRVKALADAAREAGLDF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOD6 (50S ribosomal protein L18 OS=Clostridium difficile (strain 630) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/118 (54.24%), Postives = 87/118 (73.73%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K  +R  RH R+R+KI GT +RPRLCVFRS  ++Y Q+IDDTK  TL +AS+++  +   ++++     E +KKVGE++AK  +EKGIT+V FDRGGY YHGRIQ LA+ ARE GL+F
Sbjct:    7 KNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK--EAAKKVGELVAKKAVEKGITEVVFDRGGYLYHGRIQELAEGAREAGLKF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLAD (50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RT RE R  RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST++K       +S  P +  +++   VG++IA+  L+ GITKV FDRGGY YHGR++ALA+AARE GL F
Sbjct:    4 RTPRELRLRRHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGLNF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_TRIEI (50S ribosomal protein L18 OS=Trichodesmium erythraeum (strain IMS101) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+++    RH R+RKK+ GT ERPRL VFRSN H+Y QVIDDTK HTL +AST++  +   +   SG   + S ++G++IA+  LEKGI KV FDRGG  YHGR++ALA+AARE GL F
Sbjct:    4 TRKDSIIKRHRRVRKKVFGTSERPRLSVFRSNMHIYAQVIDDTKQHTLVAASTLEAEVKSTI--KSGANCDASIQIGKLIAQRSLEKGIEKVVFDRGGNLYHGRVKALAEAAREAGLDF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_FERNB3.166e-3258.2050S ribosomal protein L18 OS=Fervidobacterium nodo... [more]
RL18_BACLD3.166e-3258.8250S ribosomal protein L18 OS=Bacillus licheniformi... [more]
RL18_STACT4.135e-3256.7850S ribosomal protein L18 OS=Staphylococcus carnos... [more]
RL18_CYAA55.401e-3256.3050S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_THERP7.054e-3257.0250S ribosomal protein L18 OS=Thermomicrobium roseu... [more]
RL18_STAS19.213e-3255.9350S ribosomal protein L18 OS=Staphylococcus saprop... [more]
RL18_NOSP79.213e-3256.3050S ribosomal protein L18 OS=Nostoc punctiforme (s... [more]
RL18_CLOD61.203e-3154.2450S ribosomal protein L18 OS=Clostridium difficile... [more]
RL18_CHLAD1.203e-3156.9150S ribosomal protein L18 OS=Chloroflexus aggregan... [more]
RL18_TRIEI1.571e-3155.4650S ribosomal protein L18 OS=Trichodesmium erythra... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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