CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACSU (50S ribosomal protein L18 OS=Bacillus subtilis GN=rplR PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31 Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +K R RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD TLASAST+ K ++ E S+G T + KVGE++AK EKGI+ V FDRGGY YHGR++ALADAARE GL+F Sbjct: 6 SKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDT-SAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLKF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ROSS1 (50S ribosomal protein L18 OS=Roseiflexus sp. (strain RS-1) GN=rplR PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 3.501e-31 Identity = 71/121 (58.68%), Postives = 86/121 (71.07%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RT RE R RH R+RKK+ GTP+RPRLCVFRSN H+Y QVIDDT TLA+AST++ + L +G T E +K VG +IA+ GI +V FDRGG+ YHGR+QALADAAR GLQF Sbjct: 4 RTPRELRIRRHRRVRKKVHGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---TGKTKTEQAKAVGAVIAERARAAGIERVVFDRGGFKYHGRVQALADAARAGGLQF 121
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACCN (50S ribosomal protein L18 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplR PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 3.501e-31 Identity = 68/118 (57.63%), Postives = 85/118 (72.03%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K R RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD K TL SAST+ K +L + IE + KVGE++AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVKGVTLVSASTLDK----DLALNGTGNIEAATKVGELVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAP8 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801) GN=rplR PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31 Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++E RH RIRKK++GTP PRL VFRSN H+Y Q+IDD HT+A+AST++ + L SSG T E S VG+++A+ L +GI +V FDRGG YHGR++ALADAARE GLQF Sbjct: 4 SRKESVQRRHRRIRKKVNGTPNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVEPDLKKSL--SSGSTCEASAAVGKLVAERALAQGIEQVVFDRGGNLYHGRVKALADAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACHD (50S ribosomal protein L18 OS=Bacillus halodurans GN=rplR PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31 Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 2 Query: 80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+P K R RH+ +R+ I GTPERPRL VFRS+KH+Y Q+IDD T+A+AS++ K EL +G +E +KKVGE++AK LEKG + FDRGGY YHGR+ +LADAARE GLQF Sbjct: 3 TKP-IKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLDK----ELKLENGGNVEAAKKVGELVAKRALEKGYKTIVFDRGGYVYHGRVASLADAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLSY (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplR PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31 Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RT RE R RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST +K +S P + +++ VG++IA+ L+ GITKV FDRGGY YHGR++ALA+AARE GL F Sbjct: 4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGLNF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLAA (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplR PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31 Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RT RE R RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST +K +S P + +++ VG++IA+ L+ GITKV FDRGGY YHGR++ALA+AARE GL F Sbjct: 4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGLNF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNR3 (50S ribosomal protein L18 OS=Synechococcus sp. (strain RCC307) GN=rplR PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.330e-30 Identity = 62/118 (52.54%), Postives = 86/118 (72.88%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++E RH R+R+ ++GTPERPRL V+RSN+H+Y QVIDD HTLA+AS++ K + L ++G + S VG+++AK + KGI +V FDRGG YHGR++ALA+AARE GLQF Sbjct: 5 RKEQTQKRHRRLRRHLEGTPERPRLAVYRSNEHIYAQVIDDAAQHTLAAASSLDKDLRTSL--NNGANCDASTAVGQLVAKRAIAKGIQQVVFDRGGNLYHGRVKALAEAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THETN (50S ribosomal protein L18 OS=Thermoanaerobacter tengcongensis GN=rplR PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30 Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++ E R RH R+RKK+ GTPERPRL V++S KH+Y Q+IDDTK HTL SAST+ + D + G + +K VGE+IAK LEKGI V FDRGGY YHG ++ LADAAR+ GL F Sbjct: 6 SRNELRKKRHLRVRKKVFGTPERPRLNVYKSLKHIYAQIIDDTKGHTLVSASTLDPELR---DVAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYLYHGVVKELADAARQAGLNF 121
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ROSCS (50S ribosomal protein L18 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rplR PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30 Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RT RE R RH R+RKK+ GTP+RPRLCVFRSN H+Y QVIDDT TLA+AST++ + L +G T E +K VG IA+ GI V FDRGG+ YHGRIQALADAARE GL+F Sbjct: 4 RTPRELRLRRHRRVRKKVSGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---AGKTKTERAKVVGAAIAERARAVGIECVVFDRGGFKYHGRIQALADAAREGGLKF 121 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |