CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACSU (50S ribosomal protein L18 OS=Bacillus subtilis GN=rplR PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +K   R  RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD    TLASAST+ K ++ E   S+G T   + KVGE++AK   EKGI+ V FDRGGY YHGR++ALADAARE GL+F
Sbjct:    6 SKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDT-SAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLKF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ROSS1 (50S ribosomal protein L18 OS=Roseiflexus sp. (strain RS-1) GN=rplR PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.501e-31
Identity = 71/121 (58.68%), Postives = 86/121 (71.07%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RT RE R  RH R+RKK+ GTP+RPRLCVFRSN H+Y QVIDDT   TLA+AST++  +   L   +G T  E +K VG +IA+     GI +V FDRGG+ YHGR+QALADAAR  GLQF
Sbjct:    4 RTPRELRIRRHRRVRKKVHGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---TGKTKTEQAKAVGAVIAERARAAGIERVVFDRGGFKYHGRVQALADAARAGGLQF 121          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACCN (50S ribosomal protein L18 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplR PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.501e-31
Identity = 68/118 (57.63%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD K  TL SAST+ K    +L  +    IE + KVGE++AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVKGVTLVSASTLDK----DLALNGTGNIEAATKVGELVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAP8 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801) GN=rplR PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    RH RIRKK++GTP  PRL VFRSN H+Y Q+IDD   HT+A+AST++  +   L  SSG T E S  VG+++A+  L +GI +V FDRGG  YHGR++ALADAARE GLQF
Sbjct:    4 SRKESVQRRHRRIRKKVNGTPNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVEPDLKKSL--SSGSTCEASAAVGKLVAERALAQGIEQVVFDRGGNLYHGRVKALADAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACHD (50S ribosomal protein L18 OS=Bacillus halodurans GN=rplR PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 2
Query:   80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+P  K   R  RH+ +R+ I GTPERPRL VFRS+KH+Y Q+IDD    T+A+AS++ K    EL   +G  +E +KKVGE++AK  LEKG   + FDRGGY YHGR+ +LADAARE GLQF
Sbjct:    3 TKP-IKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLDK----ELKLENGGNVEAAKKVGELVAKRALEKGYKTIVFDRGGYVYHGRVASLADAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLSY (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RT RE R  RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST +K       +S  P +  +++   VG++IA+  L+ GITKV FDRGGY YHGR++ALA+AARE GL F
Sbjct:    4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGLNF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLAA (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RT RE R  RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST +K       +S  P +  +++   VG++IA+  L+ GITKV FDRGGY YHGR++ALA+AARE GL F
Sbjct:    4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGLNF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNR3 (50S ribosomal protein L18 OS=Synechococcus sp. (strain RCC307) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.330e-30
Identity = 62/118 (52.54%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++E    RH R+R+ ++GTPERPRL V+RSN+H+Y QVIDD   HTLA+AS++ K +   L  ++G   + S  VG+++AK  + KGI +V FDRGG  YHGR++ALA+AARE GLQF
Sbjct:    5 RKEQTQKRHRRLRRHLEGTPERPRLAVYRSNEHIYAQVIDDAAQHTLAAASSLDKDLRTSL--NNGANCDASTAVGQLVAKRAIAKGIQQVVFDRGGNLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THETN (50S ribosomal protein L18 OS=Thermoanaerobacter tengcongensis GN=rplR PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++ E R  RH R+RKK+ GTPERPRL V++S KH+Y Q+IDDTK HTL SAST+   +    D + G   + +K VGE+IAK  LEKGI  V FDRGGY YHG ++ LADAAR+ GL F
Sbjct:    6 SRNELRKKRHLRVRKKVFGTPERPRLNVYKSLKHIYAQIIDDTKGHTLVSASTLDPELR---DVAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYLYHGVVKELADAARQAGLNF 121          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ROSCS (50S ribosomal protein L18 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RT RE R  RH R+RKK+ GTP+RPRLCVFRSN H+Y QVIDDT   TLA+AST++  +   L   +G T  E +K VG  IA+     GI  V FDRGG+ YHGRIQALADAARE GL+F
Sbjct:    4 RTPRELRLRRHRRVRKKVSGTPQRPRLCVFRSNMHIYAQVIDDTVGRTLAAASTVEPELRASL---AGKTKTERAKVVGAAIAERARAVGIECVVFDRGGFKYHGRIQALADAAREGGLKF 121          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_BACSU2.681e-3158.8250S ribosomal protein L18 OS=Bacillus subtilis GN=... [more]
RL18_ROSS13.501e-3158.6850S ribosomal protein L18 OS=Roseiflexus sp. (stra... [more]
RL18_BACCN3.501e-3157.6350S ribosomal protein L18 OS=Bacillus cereus subsp... [more]
RL18_CYAP84.572e-3155.4650S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_BACHD4.572e-3155.2850S ribosomal protein L18 OS=Bacillus halodurans G... [more]
RL18_CHLSY7.799e-3156.9150S ribosomal protein L18 OS=Chloroflexus aurantia... [more]
RL18_CHLAA7.799e-3156.9150S ribosomal protein L18 OS=Chloroflexus aurantia... [more]
RL18_SYNR31.330e-3052.5450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_THETN1.737e-3056.3050S ribosomal protein L18 OS=Thermoanaerobacter te... [more]
RL18_ROSCS1.737e-3059.5050S ribosomal protein L18 OS=Roseiflexus castenhol... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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