CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_KOSOT (50S ribosomal protein L18 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R ++E R  RH R+R KI GTPERPRL V+RS +H+Y Q+IDD    T+ SAST+ K + ++L  +     E +K+VG++IAK   EKGI K+ FDRGG+ +HGRI++LADAARE GL+F
Sbjct:    5 RDRKELRRKRHLRVRSKIKGTPERPRLAVYRSERHIYAQIIDDIAGRTIVSASTVDKELREKLTKTWNQ--EAAKEVGKLIAKRAAEKGIKKIVFDRGGFKFHGRIKSLADAAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACA2 (50S ribosomal protein L18 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +K   R  RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD    TLASAST+ K ++ E   S+G +   + KVGE++AK   EKG++ V FDRGGY YHGR++ALADAARE GL+F
Sbjct:    6 SKNAARQKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDS-AAAAKVGELVAKRASEKGVSDVVFDRGGYLYHGRVKALADAAREAGLKF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SORC5 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/114 (58.77%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  R  RIRKK++GTPERPRL VFRS+KH+Y QVIDD    TLA AST+ K +   LD  +   +E +KKVG +IA+ C E+ I KV FDR GY YHGR+ ALA AARE GL F
Sbjct:    8 RERRKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDN--KVEAAKKVGALIARICKERQIDKVVFDRNGYLYHGRVSALAQAAREAGLDF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CARHZ (50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  104 DRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +R  RH R+RKKI GTPERPRL V+RS KH+Y Q+IDD    TL +AST+   +  ++ Y  G  IE +K VG +IA+    KGI KV FDRGGY YHGR++ALA+AARE GLQF
Sbjct:   10 ERKRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGY--GGNIEAAKAVGRLIAERAKAKGIEKVVFDRGGYLYHGRVKALAEAAREGGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACHK (50S ribosomal protein L18 OS=Bacillus thuringiensis subsp. konkukian GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACCZ (50S ribosomal protein L18 OS=Bacillus cereus (strain ZK / E33L) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACCR (50S ribosomal protein L18 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACCQ (50S ribosomal protein L18 OS=Bacillus cereus (strain Q1) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC7 (50S ribosomal protein L18 OS=Bacillus cereus (strain AH187) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC4 (50S ribosomal protein L18 OS=Bacillus cereus (strain B4264) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_KOSOT1.737e-3053.3350S ribosomal protein L18 OS=Kosmotoga olearia (st... [more]
RL18_BACA21.737e-3057.1450S ribosomal protein L18 OS=Bacillus amyloliquefa... [more]
RL18_SORC52.269e-3058.7750S ribosomal protein L18 OS=Sorangium cellulosum ... [more]
RL18_CARHZ2.269e-3057.3950S ribosomal protein L18 OS=Carboxydothermus hydr... [more]
RL18_BACHK2.269e-3056.7850S ribosomal protein L18 OS=Bacillus thuringiensi... [more]
RL18_BACCZ2.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACCR2.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACCQ2.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACC72.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACC42.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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