CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ENTS8 (50S ribosomal protein L18 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BARBK (50S ribosomal protein L18 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20 Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 2 Query: 116 RHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R R+R++I RPRL V+RSN+++Y Q+IDD + TLASA T+++ + L SG + + VG++IA+ + GI +V FDRG Y YHGR++ALA+AARE GL F Sbjct: 11 RAKRVRRQIKAAANGRPRLSVYRSNQNIYAQIIDDVRGCTLASACTLEEGMKKSL--RSGSDKKAAFAVGKLIAERAKKSGINEVVFDRGAYVYHGRVKALAEAAREGGLSF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AZOPC (50S ribosomal protein L18 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20 Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 2 Query: 125 RIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK-----VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RIRK I GT ERPRL VFRSN+ +Y Q+IDD+ +TL AS++ G T +VSKK G ++A+ E GI V FDR GY YHGR++ LADAARE GL+F Sbjct: 14 RIRKYIFGTAERPRLTVFRSNRQIYSQLIDDSTGNTLVVASSL------------GITEKVSKKKIAYRTGVLVAQKAKEVGIRSVVFDRNGYLYHGRVKELADAAREEGLKF 114
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ ++ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+F Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLKF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_VIBHB (50S ribosomal protein L18 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ ++ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+F Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLKF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB9 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS195) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R RKKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB8 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS185) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R RKKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB5 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R RKKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB2 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R RKKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_METSB (50S ribosomal protein L18 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K DR R +R+R+ + +PRL VFRS+K +Y Q+IDD TLA+AS+++K + L +G +E ++ +G++IA+ G+T V FDRG Y YHGR++ALA+ ARE GL F Sbjct: 6 KATDR--RRARVRRTLRARAYGKPRLSVFRSSKQIYCQIIDDEAGLTLAAASSLEKSARESL--KTGADVEAARAIGKLIAERATAAGVTDVVFDRGSYLYHGRVKALAEGAREGGLNF 120 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |