CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ENTS8 (50S ribosomal protein L18 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLKELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BARBK (50S ribosomal protein L18 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 2
Query:  116 RHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  R+R++I      RPRL V+RSN+++Y Q+IDD +  TLASA T+++ +   L   SG   + +  VG++IA+   + GI +V FDRG Y YHGR++ALA+AARE GL F
Sbjct:   11 RAKRVRRQIKAAANGRPRLSVYRSNQNIYAQIIDDVRGCTLASACTLEEGMKKSL--RSGSDKKAAFAVGKLIAERAKKSGINEVVFDRGAYVYHGRVKALAEAAREGGLSF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AZOPC (50S ribosomal protein L18 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 2
Query:  125 RIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK-----VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RIRK I GT ERPRL VFRSN+ +Y Q+IDD+  +TL  AS++            G T +VSKK      G ++A+   E GI  V FDR GY YHGR++ LADAARE GL+F
Sbjct:   14 RIRKYIFGTAERPRLTVFRSNRQIYSQLIDDSTGNTLVVASSL------------GITEKVSKKKIAYRTGVLVAQKAKEVGIRSVVFDRNGYLYHGRVKELADAAREEGLKF 114          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    ++ +K VG+ +A+  LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+F
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLKF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_VIBHB (50S ribosomal protein L18 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+KI       RL V R+ +H+Y QVI       +A+AST++K I +++ Y+    ++ +K VG+ +A+  LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+F
Sbjct:    3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLKF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB9 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS195) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R RKKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB8 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS185) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R RKKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB5 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R RKKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEB2 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R RKKI       RL V R+ +H+Y QVI+  +   LA+AST++K + + L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_METSB (50S ribosomal protein L18 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K  DR  R +R+R+ +      +PRL VFRS+K +Y Q+IDD    TLA+AS+++K   + L   +G  +E ++ +G++IA+     G+T V FDRG Y YHGR++ALA+ ARE GL F
Sbjct:    6 KATDR--RRARVRRTLRARAYGKPRLSVFRSSKQIYCQIIDDEAGLTLAAASSLEKSARESL--KTGADVEAARAIGKLIAERATAAGVTDVVFDRGSYLYHGRVKALAEGAREGGLNF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ENTS83.631e-2044.9250S ribosomal protein L18 OS=Enterobacter sakazaki... [more]
RL18_BARBK3.631e-2046.4350S ribosomal protein L18 OS=Bartonella bacillifor... [more]
RL18_AZOPC3.631e-2050.4450S ribosomal protein L18 OS=Azobacteroides pseudo... [more]
RL18_VIBPA4.743e-2043.2250S ribosomal protein L18 OS=Vibrio parahaemolytic... [more]
RL18_VIBHB4.743e-2043.2250S ribosomal protein L18 OS=Vibrio harveyi (strai... [more]
RL18_SHEB94.743e-2045.7650S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_SHEB84.743e-2045.7650S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_SHEB54.743e-2045.7650S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_SHEB24.743e-2045.7650S ribosomal protein L18 OS=Shewanella baltica (s... [more]
RL18_METSB4.743e-2043.7050S ribosomal protein L18 OS=Methylocella silvestr... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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