CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_HAES1 (50S ribosomal protein L18 OS=Haemophilus somnus (strain 129Pt) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  164 RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RL + R+++H+Y QVI       LA+AST++K IS+++ Y+     + +  VG+++A+  LEKGI  VAFDR G+ YHGR+Q+LADAARE GLQF
Sbjct:   25 RLVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNK--DAAAVVGKIVAERALEKGIKSVAFDRSGFKYHGRVQSLADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AGRVS (50S ribosomal protein L18 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    R +R+R++I      RPRL V RS+K++YVQVIDD    TLA+AST+   +   L   +G     +  VG+++A+  +  G+ +V FDRG + YHGRI+ALA+AARE GL F
Sbjct:    3 SRKEALVRRANRVRRQIKAVANGRPRLSVHRSSKNIYVQVIDDVAGRTLAAASTLDGSLRSSL--KTGADTAAAAAVGKLVAERAVAAGVKEVVFDRGAFIYHGRIKALAEAAREGGLSF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AGRT5 (50S ribosomal protein L18 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    R SR+R++I      RPRL V RS+K++Y Q+IDD    TLASAST++  +   L   +G  +  +  VG+++A+  ++ G+  V FDRG + YHGRI+A+A+AARE GL F
Sbjct:    3 SRKEALARRASRVRRQIKAVANGRPRLSVHRSSKNIYAQIIDDVAGKTLASASTLEADLRSSL--KTGADVAAAAVVGKLVAERGVKAGVKDVVFDRGAFIYHGRIKAVAEAAREGGLNF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THICR (50S ribosomal protein L18 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R  + R K+ G+ +R RLCV R+ KH+Y Q+I       +AS ST+Q  I  ++ +  G   E ++ VG+ IA+     GI  VAFDR G+ YHGR+Q LAD+ARE GLQF
Sbjct:    3 KKATRLRRAKKTRAKL-GSQDRARLCVHRTPKHIYAQIISSDGSSVVASCSTVQADIKKQVAF--GGNKEAAELVGKSIAEKAKAAGIESVAFDRSGFKYHGRVQVLADSARENGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_TERTT (50S ribosomal protein L18 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT--IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K++ R  R +R R KI    E  RLCV R+ +H+Y Q+I       LASAST+ K      D  SG T  I+ +  VG++IA+     G+TKVAFDR G+ +HGR++ALADAARE GL+F
Sbjct:    4 KKQSRIRRATRSRSKIRELRET-RLCVNRTPRHIYAQIISPESDKVLASASTLDK------DLRSGATGNIDAATAVGKLIAERAKAAGVTKVAFDRSGFKFHGRVKALADAARESGLEF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PROA2 (50S ribosomal protein L18 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   98 REDRTARHSRIRKKI----DGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            + D+ AR  +I+ +      GT   PRLCVFRS   +Y Q++DD    TL + S+M K  + EL    G   EVS  +G+ I +  L +GITKV FDR G+ YHGR++ALA+ ARE GL F
Sbjct:    3 QNDKAARRQKIKLRSKTRGQGTAASPRLCVFRSVSQIYAQLVDDVNGATLLAVSSMAKE-NKEL---KGTKTEVSHTIGKQIGEKALAQGITKVIFDRNGFRYHGRVKALAEGAREAGLVF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ORITB (50S ribosomal protein L18 OS=Orientia tsutsugamushi (strain Boryong) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPER--PRLCVFRSNKHLYVQVIDD---TKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 433
            R  ++    R +R+R KI        PRL VF+SN+H+Y QVI++    K +T+A+AST+ K I  E  Y     I+ +KKVG+++A+    KGIT V FDRGGY YHG I+ALAD ARE
Sbjct:    2 RDSKDRFIIRKNRVRAKIAKLSGGCYPRLSVFKSNRHIYAQVIENIGSNKSNTIAAASTLDKDIFTESKYYKC-NIQYAKKVGQLLAERANSKGITSVVFDRGGYKYHGVIKALADGARE 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BORT9 (50S ribosomal protein L18 OS=Borrelia turicatae (strain 91E135) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  116 RHSRIRKKID-GTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 442
            R  RIR +I  G  +RPR+ VF+SNK+ YVQVIDD   HTLAS ST++K      D      I+  +K+GE++AK   +K I K+ FDR GY YHG I + A + RE G+
Sbjct:   14 RKKRIRDRIGFGVADRPRVTVFKSNKYFYVQVIDDVAGHTLASVSTIEK------DLKLNKNIDDIRKLGEVLAKKLKDKNINKLIFDRNGYKYHGLIASFATSLREAGI 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SPHAL (50S ribosomal protein L18 OS=Sphingopyxis alaskensis GN=rplR PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   92 TKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+ E R  R  + +R++  G   RPRL V RS +H+Y Q+IDD    TLA+AST+ K +  +    +G T   +  VG+ +A +  + G+T+V FDRGG+ +HGRI+ALADAARE GL+F
Sbjct:    5 TQFEKRRQRVRTALRQRAAG---RPRLSVHRSGRHIYAQLIDDAAGTTLAAASTLDKDVRGK----TGATTAAAADVGKRLAAAAKKAGVTQVVFDRGGFLFHGRIKALADAAREGGLEF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PSEPW (50S ribosomal protein L18 OS=Pseudomonas putida (strain W619) GN=rplR PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R  + R K+    E  RLCVFRS++H+Y QVI       LASAST+ K + D     +   I+ + KVG+++A+     G+++VAFDR G+ YHGR++ALADAARE GL+F
Sbjct:    4 KKVTRLRRARKARLKMHEL-EVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLEF 116          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_HAES16.194e-2049.4750S ribosomal protein L18 OS=Haemophilus somnus (s... [more]
RL18_AGRVS6.194e-2043.3350S ribosomal protein L18 OS=Agrobacterium vitis (... [more]
RL18_AGRT56.194e-2042.5050S ribosomal protein L18 OS=Agrobacterium tumefac... [more]
RL18_THICR8.090e-2044.0750S ribosomal protein L18 OS=Thiomicrospira crunog... [more]
RL18_TERTT8.090e-2046.6750S ribosomal protein L18 OS=Teredinibacter turner... [more]
RL18_PROA28.090e-2044.6350S ribosomal protein L18 OS=Prosthecochloris aest... [more]
RL18_ORITB8.090e-2046.6750S ribosomal protein L18 OS=Orientia tsutsugamush... [more]
RL18_BORT98.090e-2047.2750S ribosomal protein L18 OS=Borrelia turicatae (s... [more]
RL18_SPHAL1.057e-1945.0050S ribosomal protein L18 OS=Sphingopyxis alaskens... [more]
RL18_PSEPW1.057e-1944.9250S ribosomal protein L18 OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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