CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_HAES1 (50S ribosomal protein L18 OS=Haemophilus somnus (strain 129Pt) GN=rplR PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20 Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 2 Query: 164 RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RL + R+++H+Y QVI LA+AST++K IS+++ Y+ + + VG+++A+ LEKGI VAFDR G+ YHGR+Q+LADAARE GLQF Sbjct: 25 RLVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNK--DAAAVVGKIVAERALEKGIKSVAFDRSGFKYHGRVQSLADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AGRVS (50S ribosomal protein L18 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplR PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20 Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++E R +R+R++I RPRL V RS+K++YVQVIDD TLA+AST+ + L +G + VG+++A+ + G+ +V FDRG + YHGRI+ALA+AARE GL F Sbjct: 3 SRKEALVRRANRVRRQIKAVANGRPRLSVHRSSKNIYVQVIDDVAGRTLAAASTLDGSLRSSL--KTGADTAAAAAVGKLVAERAVAAGVKEVVFDRGAFIYHGRIKALAEAAREGGLSF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AGRT5 (50S ribosomal protein L18 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplR PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20 Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++E R SR+R++I RPRL V RS+K++Y Q+IDD TLASAST++ + L +G + + VG+++A+ ++ G+ V FDRG + YHGRI+A+A+AARE GL F Sbjct: 3 SRKEALARRASRVRRQIKAVANGRPRLSVHRSSKNIYAQIIDDVAGKTLASASTLEADLRSSL--KTGADVAAAAVVGKLVAERGVKAGVKDVVFDRGAFIYHGRIKAVAEAAREGGLNF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THICR (50S ribosomal protein L18 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplR PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20 Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R + R K+ G+ +R RLCV R+ KH+Y Q+I +AS ST+Q I ++ + G E ++ VG+ IA+ GI VAFDR G+ YHGR+Q LAD+ARE GLQF Sbjct: 3 KKATRLRRAKKTRAKL-GSQDRARLCVHRTPKHIYAQIISSDGSSVVASCSTVQADIKKQVAF--GGNKEAAELVGKSIAEKAKAAGIESVAFDRSGFKYHGRVQVLADSARENGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_TERTT (50S ribosomal protein L18 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplR PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20 Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPT--IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K++ R R +R R KI E RLCV R+ +H+Y Q+I LASAST+ K D SG T I+ + VG++IA+ G+TKVAFDR G+ +HGR++ALADAARE GL+F Sbjct: 4 KKQSRIRRATRSRSKIRELRET-RLCVNRTPRHIYAQIISPESDKVLASASTLDK------DLRSGATGNIDAATAVGKLIAERAKAAGVTKVAFDRSGFKFHGRVKALADAARESGLEF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PROA2 (50S ribosomal protein L18 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplR PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20 Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 2 Query: 98 REDRTARHSRIRKKI----DGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 + D+ AR +I+ + GT PRLCVFRS +Y Q++DD TL + S+M K + EL G EVS +G+ I + L +GITKV FDR G+ YHGR++ALA+ ARE GL F Sbjct: 3 QNDKAARRQKIKLRSKTRGQGTAASPRLCVFRSVSQIYAQLVDDVNGATLLAVSSMAKE-NKEL---KGTKTEVSHTIGKQIGEKALAQGITKVIFDRNGFRYHGRVKALAEGAREAGLVF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ORITB (50S ribosomal protein L18 OS=Orientia tsutsugamushi (strain Boryong) GN=rplR PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20 Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPER--PRLCVFRSNKHLYVQVIDD---TKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 433 R ++ R +R+R KI PRL VF+SN+H+Y QVI++ K +T+A+AST+ K I E Y I+ +KKVG+++A+ KGIT V FDRGGY YHG I+ALAD ARE Sbjct: 2 RDSKDRFIIRKNRVRAKIAKLSGGCYPRLSVFKSNRHIYAQVIENIGSNKSNTIAAASTLDKDIFTESKYYKC-NIQYAKKVGQLLAERANSKGITSVVFDRGGYKYHGVIKALADGARE 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BORT9 (50S ribosomal protein L18 OS=Borrelia turicatae (strain 91E135) GN=rplR PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20 Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 2 Query: 116 RHSRIRKKID-GTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 442 R RIR +I G +RPR+ VF+SNK+ YVQVIDD HTLAS ST++K D I+ +K+GE++AK +K I K+ FDR GY YHG I + A + RE G+ Sbjct: 14 RKKRIRDRIGFGVADRPRVTVFKSNKYFYVQVIDDVAGHTLASVSTIEK------DLKLNKNIDDIRKLGEVLAKKLKDKNINKLIFDRNGYKYHGLIASFATSLREAGI 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SPHAL (50S ribosomal protein L18 OS=Sphingopyxis alaskensis GN=rplR PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19 Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 92 TKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+ E R R + +R++ G RPRL V RS +H+Y Q+IDD TLA+AST+ K + + +G T + VG+ +A + + G+T+V FDRGG+ +HGRI+ALADAARE GL+F Sbjct: 5 TQFEKRRQRVRTALRQRAAG---RPRLSVHRSGRHIYAQLIDDAAGTTLAAASTLDKDVRGK----TGATTAAAADVGKRLAAAAKKAGVTQVVFDRGGFLFHGRIKALADAAREGGLEF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PSEPW (50S ribosomal protein L18 OS=Pseudomonas putida (strain W619) GN=rplR PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R + R K+ E RLCVFRS++H+Y QVI LASAST+ K + D + I+ + KVG+++A+ G+++VAFDR G+ YHGR++ALADAARE GL+F Sbjct: 4 KKVTRLRRARKARLKMHEL-EVVRLCVFRSSQHIYAQVISADGSKVLASASTLDKDLRD----GATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLEF 116 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |