CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC3 (50S ribosomal protein L18 OS=Bacillus cereus (strain 03BB102) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC1 (50S ribosomal protein L18 OS=Bacillus cereus (strain ATCC 10987) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACAN (50S ribosomal protein L18 OS=Bacillus anthracis GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACAC (50S ribosomal protein L18 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACAA (50S ribosomal protein L18 OS=Bacillus anthracis (strain A0248) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RK18_CYAPA (50S ribosomal protein L18, cyanelle OS=Cyanophora paradoxa GN=rpl18 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 64/119 (53.78%), Postives = 88/119 (73.95%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+++    RH R+R+K+ GT ERPRL VFRS++H+Y Q+IDDT+  TLA++ST++  + +  + SS  T   S  VG++IAK  LEKGIT+V FDRGG  YHGR++ LA+AARE GLQF
Sbjct:    4 TRKQATQRRHRRVRRKVFGTSERPRLAVFRSHQHIYAQIIDDTQHRTLAASSTLEPSVKNS-ELSSTSTCAASAIVGQLIAKKALEKGITQVVFDRGGKIYHGRVRTLAEAAREAGLQF 121          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_MICAN (50S ribosomal protein L18 OS=Microcystis aeruginosa (strain NIES-843) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    RH R+R+KI+GT ERPRL VFRSN H+Y Q+IDD   HTLA+AST++  +  EL+  S  T E S  VG+++A+  L+KGI +V FDRGG  YHGR++ALA+AAR  GL F
Sbjct:    4 SRKESVRRRHQRVRRKINGTAERPRLSVFRSNNHIYAQIIDDVAQHTLAAASTLEATLRGELE--STATQEASAAVGKLVAQRALDKGIEQVVFDRGGNLYHGRVKALAEAARSAGLNF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_HELMI (50S ribosomal protein L18 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.871e-30
Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  +H RIRK++ GT ERPRLCVFRS  H+Y QV++D    TL +AS++      +    SG  IE +KKVGE+IAK  LEKGI KV FDRGGY YHGRI ALA+AARE GLQF
Sbjct:   11 RQKKHMRIRKRVKGTEERPRLCVFRSLNHIYAQVVNDVTGRTLVAASSLDGEF--KAANVSGGNIEGAKKVGELIAKKALEKGIDKVVFDRGGYIYHGRIAALAEAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THELT (50S ribosomal protein L18 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 67/122 (54.92%), Postives = 87/122 (71.31%), Query Frame = 2
Query:   95 KREDRT----ARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+EDR      RH RIRKK+ GT ERPRL VFRS KH+Y Q+IDDTK HTL SAST+   +   +  +     E +K+VG+++A+  L KGI++V FDRGG+ +HGRI+ LADAARE GL+F
Sbjct:    3 KKEDRKFKRIKRHLRIRKKVFGTSERPRLSVFRSEKHIYAQIIDDTKGHTLVSASTLDPDLRARIAKTYNK--EAAKEVGKLVAQKALSKGISQVVFDRGGFKFHGRIRELADAAREAGLKF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOBB (50S ribosomal protein L18 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  RT RH R+RKK+ GTP+RPRL VFRS K++YVQ+IDD    T+ +AS++ K    E   ++G   E +K VG  +AK  +EKGIT+V FDRGGY YHGR+Q LA+ ARE GL+F
Sbjct:    7 KKASRTKRHLRVRKKVFGTPDRPRLSVFRSEKNIYVQIIDDVNAVTIVAASSLDK----EFSTNNGGNKEGAKLVGAAVAKKAIEKGITEVVFDRGGYVYHGRVQELAEGAREAGLKF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_BACC32.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACC12.269e-3056.7850S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_BACAN2.269e-3056.7850S ribosomal protein L18 OS=Bacillus anthracis GN... [more]
RL18_BACAC2.269e-3056.7850S ribosomal protein L18 OS=Bacillus anthracis (s... [more]
RL18_BACAA2.269e-3056.7850S ribosomal protein L18 OS=Bacillus anthracis (s... [more]
RK18_CYAPA2.269e-3053.7850S ribosomal protein L18, cyanelle OS=Cyanophora ... [more]
RL18_MICAN2.964e-3053.7850S ribosomal protein L18 OS=Microcystis aeruginos... [more]
RL18_HELMI3.871e-3059.6550S ribosomal protein L18 OS=Heliobacterium modest... [more]
RL18_THELT5.055e-3054.9250S ribosomal protein L18 OS=Thermotoga lettingae ... [more]
RL18_CLOBB5.055e-3054.2450S ribosomal protein L18 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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