CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ACIBL (50S ribosomal protein L18 OS=Acidobacteria bacterium (strain Ellin345) GN=rplR PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 2
Query:  119 HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            HSRIRKK++GTPERPRL V+RS  HLYVQVIDD+K  TL +A+T++   + E    +G  +  +K++G+ IA+   +KGI KV FDRGGY YHGRI+ALADAARE GL+F
Sbjct:   15 HSRIRKKMEGTPERPRLNVYRSTNHLYVQVIDDSKGATLVAANTLEFGEAKEGKRPTGGNLSAAKQLGKAIAERAKQKGINKVVFDRGGYLYHGRIKALADAAREGGLEF 124          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEPX (50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30
Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 2
Query:   80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+P  + E R  RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL  AST+   +      + G   + +K VGE+IAK  LEKGI  V FDRGGY YHG ++ LADAAR+ GL F
Sbjct:    3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGLNF 121          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEP3 (50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30
Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 2
Query:   80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+P  + E R  RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL  AST+   +      + G   + +K VGE+IAK  LEKGI  V FDRGGY YHG ++ LADAAR+ GL F
Sbjct:    3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGLNF 121          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNPW (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH7803) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++++    RH R+R+ + GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L  ++G T + S  VGE++AK  L KGI +V FDRGG  YHGR++ALADAARE GLQF
Sbjct:    5 SRKQQTQKRHRRLRRHLSGTADRPRLAVFRSNSHIYAQVIDDAAQSTLCSASTLDKDLRTSLT-ATGSTCDASVAVGELVAKRALAKGIQQVVFDRGGNLYHGRVKALADAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNJB (50S ribosomal protein L18 OS=Synechococcus sp. GN=rplR PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 2
Query:   89 RTKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +T R+  T R H RIR+K+ GT ERPRL VFRS++H+Y QVIDD   HTLASAST+ + + ++   +   T E +  VG  +A+  L+ GI++V FDRGG  YHGR+QALA+AARE GLQF
Sbjct:    2 KTSRKITTQRRHRRIRRKVFGTAERPRLAVFRSHRHIYAQVIDDVAQHTLASASTLDRELREKFKETGTATQEAAALVGRSVAERALQMGISRVVFDRGGKLYHGRVQALAEAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_MACCJ (50S ribosomal protein L18 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R K+ GT ERPRL V+RSNKH+Y QVIDD K  TLA AST  K     L   +   +E + KVGE +AK  +EKG+  V FDRGGY +HGR++ALADAARE GL+F
Sbjct:    7 KNKVRMKRHARVRSKLAGTTERPRLNVYRSNKHIYAQVIDDVKGVTLAQASTQDK----NLGLETTSNVEAAAKVGEAVAKLAVEKGVKAVVFDRGGYLFHGRVKALADAARENGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC2 (50S ribosomal protein L18 OS=Bacillus cereus (strain G9842) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.623e-30
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +     E + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOPH (50S ribosomal protein L18 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.126e-29
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K E R  +H+RIR +  GTP RPRL VFRSN H+Y Q+IDDT  +TL SAST++K +  EL+ ++   +  +  +G +IAK  LEKGIT V FDRGG+ Y G++QALA+AARE GL F
Sbjct:    7 KSEVRIKKHNRIRNRFSGTPTRPRLAVFRSNNHMYAQIIDDTVGNTLVSASTLEKGVKAELEKTN--DVAAAAMLGTVIAKKALEKGITTVVFDRGGFIYQGKVQALAEAAREAGLNF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC0 (50S ribosomal protein L18 OS=Bacillus cereus (strain AH820) GN=rplR PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.126e-29
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +E G+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEXGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEM4 (50S ribosomal protein L18 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH  IRKKI GT ERPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L  +     E +++VG++I K  +EKGI KV FDRGGY YHGR+  LA+ ARE GL+F
Sbjct:   11 RKKRHLSIRKKIYGTVERPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLEF 122          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ACIBL5.055e-3059.0950S ribosomal protein L18 OS=Acidobacteria bacteri... [more]
RL18_THEPX6.602e-3056.1050S ribosomal protein L18 OS=Thermoanaerobacter sp... [more]
RL18_THEP36.602e-3056.1050S ribosomal protein L18 OS=Thermoanaerobacter ps... [more]
RL18_SYNPW6.602e-3053.7850S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_SYNJB6.602e-3053.7250S ribosomal protein L18 OS=Synechococcus sp. GN=... [more]
RL18_MACCJ6.602e-3055.9350S ribosomal protein L18 OS=Macrococcus caseolyti... [more]
RL18_BACC28.623e-3055.9350S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_CLOPH1.126e-2954.2450S ribosomal protein L18 OS=Clostridium phytoferm... [more]
RL18_BACC01.126e-2955.9350S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_THEM41.471e-2955.2650S ribosomal protein L18 OS=Thermosipho melanesie... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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