CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ACIBL (50S ribosomal protein L18 OS=Acidobacteria bacterium (strain Ellin345) GN=rplR PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30 Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 2 Query: 119 HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 HSRIRKK++GTPERPRL V+RS HLYVQVIDD+K TL +A+T++ + E +G + +K++G+ IA+ +KGI KV FDRGGY YHGRI+ALADAARE GL+F Sbjct: 15 HSRIRKKMEGTPERPRLNVYRSTNHLYVQVIDDSKGATLVAANTLEFGEAKEGKRPTGGNLSAAKQLGKAIAERAKQKGINKVVFDRGGYLYHGRIKALADAAREGGLEF 124
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEPX (50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514) GN=rplR PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30 Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+P + E R RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL AST+ + + G + +K VGE+IAK LEKGI V FDRGGY YHG ++ LADAAR+ GL F Sbjct: 3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGLNF 121
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEP3 (50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30 Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+P + E R RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL AST+ + + G + +K VGE+IAK LEKGI V FDRGGY YHG ++ LADAAR+ GL F Sbjct: 3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGLNF 121
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNPW (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH7803) GN=rplR PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30 Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++++ RH R+R+ + GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L ++G T + S VGE++AK L KGI +V FDRGG YHGR++ALADAARE GLQF Sbjct: 5 SRKQQTQKRHRRLRRHLSGTADRPRLAVFRSNSHIYAQVIDDAAQSTLCSASTLDKDLRTSLT-ATGSTCDASVAVGELVAKRALAKGIQQVVFDRGGNLYHGRVKALADAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNJB (50S ribosomal protein L18 OS=Synechococcus sp. GN=rplR PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30 Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 2 Query: 89 RTKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +T R+ T R H RIR+K+ GT ERPRL VFRS++H+Y QVIDD HTLASAST+ + + ++ + T E + VG +A+ L+ GI++V FDRGG YHGR+QALA+AARE GLQF Sbjct: 2 KTSRKITTQRRHRRIRRKVFGTAERPRLAVFRSHRHIYAQVIDDVAQHTLASASTLDRELREKFKETGTATQEAAALVGRSVAERALQMGISRVVFDRGGKLYHGRVQALAEAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_MACCJ (50S ribosomal protein L18 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplR PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30 Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R K+ GT ERPRL V+RSNKH+Y QVIDD K TLA AST K L + +E + KVGE +AK +EKG+ V FDRGGY +HGR++ALADAARE GL+F Sbjct: 7 KNKVRMKRHARVRSKLAGTTERPRLNVYRSNKHIYAQVIDDVKGVTLAQASTQDK----NLGLETTSNVEAAAKVGEAVAKLAVEKGVKAVVFDRGGYLFHGRVKALADAARENGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC2 (50S ribosomal protein L18 OS=Bacillus cereus (strain G9842) GN=rplR PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 8.623e-30 Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K R RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD TL SAST+ K +L + E + KVGE +AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOPH (50S ribosomal protein L18 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.126e-29 Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K E R +H+RIR + GTP RPRL VFRSN H+Y Q+IDDT +TL SAST++K + EL+ ++ + + +G +IAK LEKGIT V FDRGG+ Y G++QALA+AARE GL F Sbjct: 7 KSEVRIKKHNRIRNRFSGTPTRPRLAVFRSNNHMYAQIIDDTVGNTLVSASTLEKGVKAELEKTN--DVAAAAMLGTVIAKKALEKGITTVVFDRGGFIYQGKVQALAEAAREAGLNF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACC0 (50S ribosomal protein L18 OS=Bacillus cereus (strain AH820) GN=rplR PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.126e-29 Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K R RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD TL SAST+ K +L + IE + KVGE +AK +E G+ +V FDRGGY YHGR++ALA+AARE GLQF Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEXGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEM4 (50S ribosomal protein L18 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29 Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH IRKKI GT ERPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L + E +++VG++I K +EKGI KV FDRGGY YHGR+ LA+ ARE GL+F Sbjct: 11 RKKRHLSIRKKIYGTVERPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLEF 122 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |