CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEAB (50S ribosomal protein L18 OS=Thermosipho africanus (strain TCF52B) GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29 Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH IRKKI GT +RPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L + E +++VG++I K +EKGI KV FDRGGY YHGR+ LA+ ARE GL+F Sbjct: 11 RKKRHLSIRKKIHGTADRPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNJA (50S ribosomal protein L18 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29 Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T++ RH RIR+K+ GTPERPRL VFRS++H+Y QVIDD HTL SAST+ + + + T E + VG +A+ L+ GI +V FDRGG YHGR+QALA+AARE GLQF Sbjct: 4 TRKAATQRRHRRIRRKVFGTPERPRLAVFRSHRHIYAQVIDDVAQHTLVSASTLDRELREAFKDIGTATREAAAVVGRSVAQRALQAGICQVVFDRGGKLYHGRVQALAEAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAHJ (50S ribosomal protein L18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29 Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R K+ GT E+PRL V+RSNKH+Y Q+IDD K TL AS+ K I+ + S +++S KVGE IAK +KGI ++ FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGETLVQASSKDKDIASD----STSKVDLSTKVGEAIAKKASDKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29 Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R RH R+RK + GT E+PRL VF+S KH+Y Q+IDDTK TLASAST QK + ++L+ + +K+VG++IA+ EKGIT++ FDR GY YHG+++ALA+AARE GL+F Sbjct: 7 KKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQLKEKLEKTWDE--NAAKEVGKLIAEKAKEKGITEIVFDRSGYKYHGKVKALAEAARETGLKF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISIN (50S ribosomal protein L18 OS=Listeria innocua GN=rplR PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29 Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R KI GT RPRL VFRSNK++Y QVIDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQVIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISW6 (50S ribosomal protein L18 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMO (50S ribosomal protein L18 OS=Listeria monocytogenes GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMH (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMF (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMC (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R KI GT RPRL VFRSNK++Y Q+IDD TLASAS + K S+ ++ + KVGE++AK EKGIT V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |