CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEAB (50S ribosomal protein L18 OS=Thermosipho africanus (strain TCF52B) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH  IRKKI GT +RPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L  +     E +++VG++I K  +EKGI KV FDRGGY YHGR+  LA+ ARE GL+F
Sbjct:   11 RKKRHLSIRKKIHGTADRPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNJA (50S ribosomal protein L18 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T++     RH RIR+K+ GTPERPRL VFRS++H+Y QVIDD   HTL SAST+ + + +        T E +  VG  +A+  L+ GI +V FDRGG  YHGR+QALA+AARE GLQF
Sbjct:    4 TRKAATQRRHRRIRRKVFGTPERPRLAVFRSHRHIYAQVIDDVAQHTLVSASTLDRELREAFKDIGTATREAAAVVGRSVAQRALQAGICQVVFDRGGKLYHGRVQALAEAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAHJ (50S ribosomal protein L18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R K+ GT E+PRL V+RSNKH+Y Q+IDD K  TL  AS+  K I+ +    S   +++S KVGE IAK   +KGI ++ FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGETLVQASSKDKDIASD----STSKVDLSTKVGEAIAKKASDKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  RH R+RK + GT E+PRL VF+S KH+Y Q+IDDTK  TLASAST QK + ++L+ +       +K+VG++IA+   EKGIT++ FDR GY YHG+++ALA+AARE GL+F
Sbjct:    7 KKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQLKEKLEKTWDE--NAAKEVGKLIAEKAKEKGITEIVFDRSGYKYHGKVKALAEAARETGLKF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISIN (50S ribosomal protein L18 OS=Listeria innocua GN=rplR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R KI GT  RPRL VFRSNK++Y QVIDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQVIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISW6 (50S ribosomal protein L18 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMO (50S ribosomal protein L18 OS=Listeria monocytogenes GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMH (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMF (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LISMC (50S ribosomal protein L18 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R KI GT  RPRL VFRSNK++Y Q+IDD    TLASAS + K        S+   ++ + KVGE++AK   EKGIT V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    7 KNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFG-----SAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF 119          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_THEAB1.471e-2954.3950S ribosomal protein L18 OS=Thermosipho africanus... [more]
RL18_SYNJA1.471e-2952.9450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_STAHJ1.471e-2953.3950S ribosomal protein L18 OS=Staphylococcus haemol... [more]
RL18_PETMO1.471e-2953.3950S ribosomal protein L18 OS=Petrotoga mobilis (st... [more]
RL18_LISIN1.471e-2955.9350S ribosomal protein L18 OS=Listeria innocua GN=r... [more]
RL18_LISW61.921e-2955.0850S ribosomal protein L18 OS=Listeria welshimeri s... [more]
RL18_LISMO1.921e-2955.0850S ribosomal protein L18 OS=Listeria monocytogene... [more]
RL18_LISMH1.921e-2955.0850S ribosomal protein L18 OS=Listeria monocytogene... [more]
RL18_LISMF1.921e-2955.0850S ribosomal protein L18 OS=Listeria monocytogene... [more]
RL18_LISMC1.921e-2955.0850S ribosomal protein L18 OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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