CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOBA (50S ribosomal protein L18 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ RT RH R+RKK+ GTP+RPRL VFRS K++Y Q+IDD T+ +AS++ K S ++G E +K VG +AK +EKGIT+V FDRGGY YHGR+Q LA+ ARE GL+F Sbjct: 7 KKASRTKRHLRVRKKVFGTPDRPRLSVFRSEKNIYAQIIDDVNAVTIVAASSLDKEFS-----TNGGNKEGAKLVGAAVAKKAIEKGITEVVFDRGGYVYHGRVQELAEGAREAGLKF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACWK (50S ribosomal protein L18 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplR PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29 Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K R RH+R+R K+ GT ERPRL V+RSN+H+Y QVIDD TL SAST+ K +L + E + KVGE +AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVYRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOAB (50S ribosomal protein L18 OS=Clostridium acetobutylicum GN=rplR PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.509e-29 Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH R+R KI GTPERPRL V+RS K++Y QVIDD TL SAST+ K S + +G E +K VG ++AK L+KGI +V FDRGGY YHGRI+ LA+AARE GL+F Sbjct: 4 KVQSRKRRHLRVRNKISGTPERPRLAVYRSEKNIYAQVIDDVNGTTLVSASTLDKDFSAK----AGSNKEAAKLVGGIVAKKALDKGIKQVVFDRGGYIYHGRIKELAEAAREAGLEF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACP2 (50S ribosomal protein L18 OS=Bacillus pumilus (strain SAFR-032) GN=rplR PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.509e-29 Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +K R RH+R+R K+ GT ERPRL VFRSNK++Y QVIDD TL SAST+ K +L + + KVGE++AK +EKGI+ V FDRGGY YHGR++ALA+AARE GL+F Sbjct: 6 SKNATRLKRHARVRAKLSGTAERPRLNVFRSNKNIYAQVIDDVNGVTLVSASTLDK----DLKIENSSDAAAATKVGELVAKRAVEKGISNVVFDRGGYLYHGRVKALAEAAREAGLKF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOPS (50S ribosomal protein L18 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplR PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++E R RH R+RKK+ GTPERPRL V+RS K++Y Q+IDD TL +AS++ K I + G E +K VGE++AK +EKGI V FDRGGY YHGR++ALA ARE GL+F Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK-----GSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLKF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOPE (50S ribosomal protein L18 OS=Clostridium perfringens GN=rplR PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++E R RH R+RKK+ GTPERPRL V+RS K++Y Q+IDD TL +AS++ K I + G E +K VGE++AK +EKGI V FDRGGY YHGR++ALA ARE GL+F Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK-----GSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLKF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOP1 (50S ribosomal protein L18 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplR PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++E R RH R+RKK+ GTPERPRL V+RS K++Y Q+IDD TL +AS++ K I + G E +K VGE++AK +EKGI V FDRGGY YHGR++ALA ARE GL+F Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK-----GSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLKF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNY3 (50S ribosomal protein L18 OS=Synechocystis sp. (strain PCC 6803) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T++ RH R+R+ + GT ERPRL VFRSN H+Y QVIDD HTLA+AST+ + L SS T E S +VG+++A+ + KGI +V FDRGG YHGR++ALA+AARE GL F Sbjct: 4 TRKSATQRRHRRLRRHLSGTSERPRLAVFRSNDHIYAQVIDDVAQHTLAAASTLDPDLKKSL--SSTATQEASAEVGKLVAQRAIAKGINQVVFDRGGKLYHGRVKALAEAAREAGLNF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAES (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R K+ GT E+PRL V+RSNKH+Y Q+IDD K TLA AS+ K I++ +S ++++ VG+ IAK +KGI ++ FDRGGY YHGR++ALADAARE GL+F Sbjct: 7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAEQ (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH+R+R K+ GT E+PRL V+RSNKH+Y Q+IDD K TLA AS+ K I++ +S ++++ VG+ IAK +KGI ++ FDRGGY YHGR++ALADAARE GL+F Sbjct: 7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLEF 120 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |