CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOBA (50S ribosomal protein L18 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  RT RH R+RKK+ GTP+RPRL VFRS K++Y Q+IDD    T+ +AS++ K  S     ++G   E +K VG  +AK  +EKGIT+V FDRGGY YHGR+Q LA+ ARE GL+F
Sbjct:    7 KKASRTKRHLRVRKKVFGTPDRPRLSVFRSEKNIYAQIIDDVNAVTIVAASSLDKEFS-----TNGGNKEGAKLVGAAVAKKAIEKGITEVVFDRGGYVYHGRVQELAEGAREAGLKF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACWK (50S ribosomal protein L18 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplR PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R K+ GT ERPRL V+RSN+H+Y QVIDD    TL SAST+ K    +L  +     E + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVYRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOAB (50S ribosomal protein L18 OS=Clostridium acetobutylicum GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.509e-29
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH R+R KI GTPERPRL V+RS K++Y QVIDD    TL SAST+ K  S +    +G   E +K VG ++AK  L+KGI +V FDRGGY YHGRI+ LA+AARE GL+F
Sbjct:    4 KVQSRKRRHLRVRNKISGTPERPRLAVYRSEKNIYAQVIDDVNGTTLVSASTLDKDFSAK----AGSNKEAAKLVGGIVAKKALDKGIKQVVFDRGGYIYHGRIKELAEAAREAGLEF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACP2 (50S ribosomal protein L18 OS=Bacillus pumilus (strain SAFR-032) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.509e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +K   R  RH+R+R K+ GT ERPRL VFRSNK++Y QVIDD    TL SAST+ K    +L   +      + KVGE++AK  +EKGI+ V FDRGGY YHGR++ALA+AARE GL+F
Sbjct:    6 SKNATRLKRHARVRAKLSGTAERPRLNVFRSNKNIYAQVIDDVNGVTLVSASTLDK----DLKIENSSDAAAATKVGELVAKRAVEKGISNVVFDRGGYLYHGRVKALAEAAREAGLKF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOPS (50S ribosomal protein L18 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++E R  RH R+RKK+ GTPERPRL V+RS K++Y Q+IDD    TL +AS++ K I  +     G   E +K VGE++AK  +EKGI  V FDRGGY YHGR++ALA  ARE GL+F
Sbjct:    7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK-----GSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLKF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOPE (50S ribosomal protein L18 OS=Clostridium perfringens GN=rplR PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++E R  RH R+RKK+ GTPERPRL V+RS K++Y Q+IDD    TL +AS++ K I  +     G   E +K VGE++AK  +EKGI  V FDRGGY YHGR++ALA  ARE GL+F
Sbjct:    7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK-----GSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLKF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLOP1 (50S ribosomal protein L18 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplR PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++E R  RH R+RKK+ GTPERPRL V+RS K++Y Q+IDD    TL +AS++ K I  +     G   E +K VGE++AK  +EKGI  V FDRGGY YHGR++ALA  ARE GL+F
Sbjct:    7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK-----GSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLKF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNY3 (50S ribosomal protein L18 OS=Synechocystis sp. (strain PCC 6803) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T++     RH R+R+ + GT ERPRL VFRSN H+Y QVIDD   HTLA+AST+   +   L  SS  T E S +VG+++A+  + KGI +V FDRGG  YHGR++ALA+AARE GL F
Sbjct:    4 TRKSATQRRHRRLRRHLSGTSERPRLAVFRSNDHIYAQVIDDVAQHTLAAASTLDPDLKKSL--SSTATQEASAEVGKLVAQRAIAKGINQVVFDRGGKLYHGRVKALAEAAREAGLNF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAES (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R K+ GT E+PRL V+RSNKH+Y Q+IDD K  TLA AS+  K I++    +S   ++++  VG+ IAK   +KGI ++ FDRGGY YHGR++ALADAARE GL+F
Sbjct:    7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_STAEQ (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH+R+R K+ GT E+PRL V+RSNKH+Y Q+IDD K  TLA AS+  K I++    +S   ++++  VG+ IAK   +KGI ++ FDRGGY YHGR++ALADAARE GL+F
Sbjct:    7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLEF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_CLOBA1.921e-2953.3950S ribosomal protein L18 OS=Clostridium botulinum... [more]
RL18_BACWK1.921e-2955.0850S ribosomal protein L18 OS=Bacillus weihenstepha... [more]
RL18_CLOAB2.509e-2955.9350S ribosomal protein L18 OS=Clostridium acetobuty... [more]
RL18_BACP22.509e-2954.6250S ribosomal protein L18 OS=Bacillus pumilus (str... [more]
RL18_CLOPS3.277e-2953.3950S ribosomal protein L18 OS=Clostridium perfringe... [more]
RL18_CLOPE3.277e-2953.3950S ribosomal protein L18 OS=Clostridium perfringe... [more]
RL18_CLOP13.277e-2953.3950S ribosomal protein L18 OS=Clostridium perfringe... [more]
RL18_SYNY37.300e-2952.9450S ribosomal protein L18 OS=Synechocystis sp. (st... [more]
RL18_STAES7.300e-2952.5450S ribosomal protein L18 OS=Staphylococcus epider... [more]
RL18_STAEQ7.300e-2952.5450S ribosomal protein L18 OS=Staphylococcus epider... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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