CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ENTFA (50S ribosomal protein L18 OS=Enterococcus faecalis GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = 2 Query: 80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+P K + R RH R+R KI GT E PRL +FRSNK++Y QVIDD TLASAS + K IS G E + VG+++A+ EKGI KV FDRGGY YHGR+QALA+AARE GL+F Sbjct: 3 TKP-DKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEIS------GGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLEF 118
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAP4 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 2 Query: 101 EDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 E +RH R+R+K+ GT +RPRL VFRS++H+Y QVIDD + HTL +AS+++ + Y G T S ++G++IA+ L KGI KV FDRGG YHGR++ALA+AARE GL+F Sbjct: 7 ESTRSRHRRVRRKVGGTGDRPRLAVFRSHQHIYAQVIDDQQQHTLVAASSLEPEFKTQ--YGEGDTCAASTQIGKLIAERSLAKGIQKVVFDRGGKLYHGRVKALAEAAREAGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLONN (50S ribosomal protein L18 OS=Clostridium novyi (strain NT) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++ R RH R+R KI GT RPRL V+RS K++Y Q+IDD TL SAST+ K ++++ G E +K VG M+AK LEKGI +V FDRGGY YHGR++ LADAARE GL+F Sbjct: 7 RQKARVKRHLRVRNKISGTAARPRLAVYRSEKNIYAQIIDDVARITLVSASTLDKEFAEKV----GSNKEAAKAVGTMVAKRALEKGIEEVVFDRGGYVYHGRVKELADAAREAGLKF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BREBN (50S ribosomal protein L18 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29 Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K + R RH RIRK++ GT RPRL VFRS+KH+Y Q+IDD TL SAS++ K EL ++G +E + VG +IAK EKG T+V FDRGGY YHGRI+ALA+AARE GLQF Sbjct: 7 KNKARKKRHLRIRKRVIGTTIRPRLNVFRSSKHIYAQLIDDATGVTLVSASSLDK----ELGLNNGANVEAATAVGTLIAKRAQEKGATEVIFDRGGYIYHGRIKALAEAAREAGLQF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNSC (50S ribosomal protein L18 OS=Synechococcus sp. (strain CC9605) GN=rplR PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29 Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++++ RH R+R+ I GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L +G + + S VGE++AK + KGI +V FDRGG YHGRI+ALADAARE GLQF Sbjct: 5 SRKQQTQKRHRRLRRHITGTSDRPRLAVFRSNNHIYAQVIDDAAQSTLCSASTVDKELRTGLKAPAG-SCDASVAVGELVAKRAMAKGIQQVVFDRGGNLYHGRIKALADAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNPX (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH8102) GN=rplR PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29 Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++++ RH R+R+ + GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L+ ++G + + S VGE++AK + KGI V FDRGG YHGRI+ALADAARE GLQF Sbjct: 5 SRKQQTQKRHRRLRRHLTGTSDRPRLAVFRSNNHIYAQVIDDDAQSTLCSASTVDKELRAGLE-ANGGSCDASVAVGELVAKRAIAKGIQSVVFDRGGNLYHGRIKALADAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PROM3 (50S ribosomal protein L18 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplR PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29 Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++++ RH R+R+ ++GT +RPRL VFRSN H+Y QVIDD +TL +AST+ K + L + G + + S VG+++AK L KGI +V FDRGG YHGR+++LADAARE GLQF Sbjct: 5 SRKQQTQKRHRRLRRHLNGTAQRPRLAVFRSNNHIYAQVIDDEAQNTLCAASTLDKDLRTSLK-ADGSSCDASNAVGDLVAKRALAKGIQQVVFDRGGNLYHGRVKSLADAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOSM (50S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29 Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R+RKKI G+P RPRL VF+S +H+Y Q+IDDT TLASAST+ +++ L Y+ IE + KVG IAK LEK IT V FDR G+ YHGRI+ALADAARE GL F Sbjct: 7 KQVARLKRQTRVRKKITGSPARPRLNVFKSARHIYAQLIDDTTGATLASASTLLGDVAEGLSYTG--NIEAATKVGAAIAKKALEKEITAVVFDRNGFLYHGRIKALADAARENGLSF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LACBA (50S ribosomal protein L18 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplR PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.245e-28 Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 T+P K + R RH R+R KI GT ERPRL VFRSNK++Y QVIDD TL SAST+ ++ + + +K VGE+IAK +EK IT V FDRGGY YHGR+QALA+AARE GL+F Sbjct: 3 TKP-DKNKTRQKRHIRVRNKISGTAERPRLNVFRSNKNIYAQVIDDVAGVTLVSASTLDSEVAGD------NKTDQAKGVGELIAKRAIEKKITNVVFDRGGYLYHGRVQALAEAAREAGLKF 118
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_EXISA (50S ribosomal protein L18 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplR PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.245e-28 Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K R RH+R+R+ I GT RPRL VFRS+KH+YVQ+IDD TL SAS+ K LD ++G +E +K VG++ A+ LEKGI V FDRGGY YHGR++A+A+AARE GL+F Sbjct: 7 KNAVRKKRHARVRRTITGTAARPRLNVFRSSKHIYVQLIDDAAQTTLVSASSKDKA----LDLTNGGNVEAAKAVGKLAAERALEKGIDTVVFDRGGYLYHGRVKAVAEAAREAGLKF 120 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |