CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ENTFA (50S ribosomal protein L18 OS=Enterococcus faecalis GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = 2
Query:   80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+P  K + R  RH R+R KI GT E PRL +FRSNK++Y QVIDD    TLASAS + K IS       G   E +  VG+++A+   EKGI KV FDRGGY YHGR+QALA+AARE GL+F
Sbjct:    3 TKP-DKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEIS------GGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLEF 118          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAP4 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 2
Query:  101 EDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            E   +RH R+R+K+ GT +RPRL VFRS++H+Y QVIDD + HTL +AS+++     +  Y  G T   S ++G++IA+  L KGI KV FDRGG  YHGR++ALA+AARE GL+F
Sbjct:    7 ESTRSRHRRVRRKVGGTGDRPRLAVFRSHQHIYAQVIDDQQQHTLVAASSLEPEFKTQ--YGEGDTCAASTQIGKLIAERSLAKGIQKVVFDRGGKLYHGRVKALAEAAREAGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CLONN (50S ribosomal protein L18 OS=Clostridium novyi (strain NT) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++ R  RH R+R KI GT  RPRL V+RS K++Y Q+IDD    TL SAST+ K  ++++    G   E +K VG M+AK  LEKGI +V FDRGGY YHGR++ LADAARE GL+F
Sbjct:    7 RQKARVKRHLRVRNKISGTAARPRLAVYRSEKNIYAQIIDDVARITLVSASTLDKEFAEKV----GSNKEAAKAVGTMVAKRALEKGIEEVVFDRGGYVYHGRVKELADAAREAGLKF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BREBN (50S ribosomal protein L18 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.300e-29
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K + R  RH RIRK++ GT  RPRL VFRS+KH+Y Q+IDD    TL SAS++ K    EL  ++G  +E +  VG +IAK   EKG T+V FDRGGY YHGRI+ALA+AARE GLQF
Sbjct:    7 KNKARKKRHLRIRKRVIGTTIRPRLNVFRSSKHIYAQLIDDATGVTLVSASSLDK----ELGLNNGANVEAATAVGTLIAKRAQEKGATEVIFDRGGYIYHGRIKALAEAAREAGLQF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNSC (50S ribosomal protein L18 OS=Synechococcus sp. (strain CC9605) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++++    RH R+R+ I GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L   +G + + S  VGE++AK  + KGI +V FDRGG  YHGRI+ALADAARE GLQF
Sbjct:    5 SRKQQTQKRHRRLRRHITGTSDRPRLAVFRSNNHIYAQVIDDAAQSTLCSASTVDKELRTGLKAPAG-SCDASVAVGELVAKRAMAKGIQQVVFDRGGNLYHGRIKALADAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SYNPX (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH8102) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29
Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++++    RH R+R+ + GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L+ ++G + + S  VGE++AK  + KGI  V FDRGG  YHGRI+ALADAARE GLQF
Sbjct:    5 SRKQQTQKRHRRLRRHLTGTSDRPRLAVFRSNNHIYAQVIDDDAQSTLCSASTVDKELRAGLE-ANGGSCDASVAVGELVAKRAIAKGIQSVVFDRGGNLYHGRIKALADAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PROM3 (50S ribosomal protein L18 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++++    RH R+R+ ++GT +RPRL VFRSN H+Y QVIDD   +TL +AST+ K +   L  + G + + S  VG+++AK  L KGI +V FDRGG  YHGR+++LADAARE GLQF
Sbjct:    5 SRKQQTQKRHRRLRRHLNGTAQRPRLAVFRSNNHIYAQVIDDEAQNTLCAASTLDKDLRTSLK-ADGSSCDASNAVGDLVAKRALAKGIQQVVFDRGGNLYHGRVKSLADAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOSM (50S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R+RKKI G+P RPRL VF+S +H+Y Q+IDDT   TLASAST+   +++ L Y+    IE + KVG  IAK  LEK IT V FDR G+ YHGRI+ALADAARE GL F
Sbjct:    7 KQVARLKRQTRVRKKITGSPARPRLNVFKSARHIYAQLIDDTTGATLASASTLLGDVAEGLSYTG--NIEAATKVGAAIAKKALEKEITAVVFDRNGFLYHGRIKALADAARENGLSF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_LACBA (50S ribosomal protein L18 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.245e-28
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 2
Query:   80 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            T+P  K + R  RH R+R KI GT ERPRL VFRSNK++Y QVIDD    TL SAST+   ++ +         + +K VGE+IAK  +EK IT V FDRGGY YHGR+QALA+AARE GL+F
Sbjct:    3 TKP-DKNKTRQKRHIRVRNKISGTAERPRLNVFRSNKNIYAQVIDDVAGVTLVSASTLDSEVAGD------NKTDQAKGVGELIAKRAIEKKITNVVFDRGGYLYHGRVQALAEAAREAGLKF 118          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_EXISA (50S ribosomal protein L18 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.245e-28
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K   R  RH+R+R+ I GT  RPRL VFRS+KH+YVQ+IDD    TL SAS+  K     LD ++G  +E +K VG++ A+  LEKGI  V FDRGGY YHGR++A+A+AARE GL+F
Sbjct:    7 KNAVRKKRHARVRRTITGTAARPRLNVFRSSKHIYVQLIDDAAQTTLVSASSKDKA----LDLTNGGNVEAAKAVGKLAAERALEKGIDTVVFDRGGYLYHGRVKAVAEAAREAGLKF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ENTFA7.300e-2955.2850S ribosomal protein L18 OS=Enterococcus faecalis... [more]
RL18_CYAP47.300e-2951.7250S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_CLONN7.300e-2953.3950S ribosomal protein L18 OS=Clostridium novyi (st... [more]
RL18_BREBN7.300e-2956.7850S ribosomal protein L18 OS=Brevibacillus brevis ... [more]
RL18_SYNSC9.534e-2953.7850S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_SYNPX9.534e-2952.9450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_PROM39.534e-2950.4250S ribosomal protein L18 OS=Prochlorococcus marin... [more]
RL18_GEOSM9.534e-2956.7850S ribosomal protein L18 OS=Geobacter sp. (strain... [more]
RL18_LACBA1.245e-2855.2850S ribosomal protein L18 OS=Lactobacillus brevis ... [more]
RL18_EXISA1.245e-2854.2450S ribosomal protein L18 OS=Exiguobacterium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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