CX300396

Overview
NameCX300396
Unique NameCX300396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 52/182 (28.57%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            LAY+  + + + SIP + Y  LPA C++TN   +P++     +  + LF       +LE   +G+ I  WW N     I  TSA LF +    L+     +  F +T K      D  E+ +F  +   +P TT+++++L     G+         + G   G  F S++V+L  +PFL+GL
Sbjct:  846 LAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 1027          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 52/182 (28.57%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            LAY+  + + + SIP + Y  LPA C++TN   +P++     +  + LF       +LE   +G+ I  WW N     I  TSA LF +    L+     +  F +T K      D  E+ +F  +   +P TT+++++L     G+         + G   G  F S++V+L  +PFL+GL
Sbjct:  846 LAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGL 1027          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.921e-15
Identity = 52/182 (28.57%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQK-IHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            +AY+  + + + SIP + Y  LPA+C+IT+   +P++     +  + LF+   +  +LE   +G+SI  WW N     I  TSA LF +    L+     +  F +T K      D  E+ +F  +   +P TT++LV+L     G+    +      G   G  F +++V+   +PFL+GL
Sbjct:  851 IAYINTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGL 1032          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            +AY+  + + + SIP L Y  LPA+C+ITN+  +P++     L  + LF       +LE   + +++  WW N     I  TSA LF +    L+ F   +  F +T K      D  E+ +F  +   +P TTI+LV+L     G+         + G  +G    + +VV   +PFL+GL
Sbjct:  838 IAYINTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWSDVALEDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGL 1019          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            AY     +   SIP L Y  LPA C++T+   +P +     L  ++LF+   +  +LE   +G+SI  WW N     I   SA LF +V   L+     +  F +T K     D  E+  F  +   +P TT++++++     G+         + G   G  F S +V++  +PFL+GL
Sbjct:  799 AYANTTIYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFISLFMSIIVTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDDDFGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGL 978          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 47/183 (25.68%), Postives = 87/183 (47.54%), Query Frame = 3
Query:    9 QCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            Q L+Y+  + +   S+P + Y  LPA C++T    +P +     +  L LF+   + ++LE   +G+ I  WW N     I   SA LF +    L+     +  F +T K    ++  E+ +F  +   +P T+I++++L     G     +      G   G  F +++V++  +PFL+GL
Sbjct:  758 QRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDTEFGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGL 940          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 47/183 (25.68%), Postives = 87/183 (47.54%), Query Frame = 3
Query:    9 QCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            Q L+Y+  + +   S+P + Y  LPA C++T    +P +     +  L LF+   + ++LE   +G+ I  WW N     I   SA LF +    L+     +  F +T K    ++  E+ +F  +   +P T+I++++L     G     +      G   G  F +++V++  +PFL+GL
Sbjct:  758 QRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDTEFGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGL 940          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 53/183 (28.96%), Postives = 84/183 (45.90%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE----VMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            AY   + +   SIP L Y  +PA C++T    +P +     +  +ALFL      +LE   +G+SI  WW N     I   SA LF +    L+  G  +  F +T K   + + D      +F  +   VP TT+I++++     G+         + G   G  F S +V+L  +PFL+GL
Sbjct:  834 AYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKA-AADETDAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGL 1015          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 53/186 (28.49%), Postives = 86/186 (46.24%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            F +  AY+    + + SIP L Y  LPA C+ TN   +P++     +  L+LFL      +LE   +G+ I  WW N     I   SA LF +    L+     +  F +T K      D  E+ +F  +   +P TT+++V+L     G+         + G   G  F + +V++  +PFL+GL
Sbjct:  832 FLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1017          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 53/186 (28.49%), Postives = 86/186 (46.24%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LFL      +LE   +G+ I  WW N     I   SA LF +    L+     +  F +T K      D  E+ MF  +   +P TTI++++L     G+         + G   G  F + +V++  +PFL+GL
Sbjct:  840 FLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1025          
The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CESA1_ORYSJ2.209e-1528.57Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI2.209e-1528.57Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ARATH4.921e-1528.57Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESAA_ARATH6.427e-1529.67Probable cellulose synthase A catalytic subunit 10... [more]
CESA7_ARATH4.166e-1428.33Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA4_ORYSJ1.212e-1325.68Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI1.212e-1325.68Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ2.068e-1328.96Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA3_ARATH2.700e-1328.49Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ2.700e-1328.49Probable cellulose synthase A catalytic subunit 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC07009G03SK SaltLeaf1 Citrus clementina cDNA clone C07009G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bp
AATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCGC
TCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCAC
CAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCTC
TTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCAA
GCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGTATGGCCCGAAT
TGTCACAACAAGTGCATGGTTATTTGGTCTTGTAAACGCCGCGCTCGAGC
AGTTTGGATTCTCCGAGGCAGTTTTTGAAATTACGCAAAAAATTCATCGA
TCTAGCGATGTCGATGAAGTGATGTTCGACGACTCTCCTTTCTTTGTTCC
CGGCACCACAATTATTCTGGTGCACCTCGCTGCATGGGCTACCGGCTTGC
TAAGGTTGCAATCACAATGTGCGCATGGCTCAGGGCTAGGAGACTACTTT
TGCAGTGTGTATGTGGTGCTATGCTTCTTTCCTTTTTTGCGAGGGCTATT
CATGACAGGGAAAAAGGGGA
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