CX300396

Overview
NameCX300396
Unique NameCX300396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 53/186 (28.49%), Postives = 86/186 (46.24%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LFL      +LE   +G+ I  WW N     I   SA LF +    L+     +  F +T K      D  E+ MF  +   +P TTI++++L     G+         + G   G  F + +V++  +PFL+GL
Sbjct:  840 FLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1025          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 52/186 (27.96%), Postives = 86/186 (46.24%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LF+      +LE   +G+ I  WW N     I   SA LF +    L+     +  F +T K      D  E+ MF  +   +P TTI++++L     G+         + G   G  F + +V++  +PFL+GL
Sbjct:  848 FLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1033          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 50/181 (27.62%), Postives = 86/181 (47.51%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQ--CAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            L+Y+  + +   SIP L Y +LPA C++T    +P++     ++ +ALF    +  +LE     + I  WW N     I   SA LF L    L+     E  F +T K     +  E+ +F  +   +P TT++++++     G+    S    + G   G  F + +V+L  +PFL+GL
Sbjct:  841 LSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASILFMALFGSIAVTGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGL 1021          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 49/182 (26.92%), Postives = 82/182 (45.05%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            +Y+    +   S+P L Y  LPA C++T    +P +     L  +ALF+      +LE   +G+SI  WW N     I   SA LF +V   L+     +  F +T K     D    +   F  +   +P TT++++++     G+         A G   G  F + +V++  +PFL+GL
Sbjct:  826 SYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGL 1007          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 49/182 (26.92%), Postives = 82/182 (45.05%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            +Y+    +   S+P L Y  LPA C++T    +P +     L  +ALF+      +LE   +G+SI  WW N     I   SA LF +V   L+     +  F +T K     D    +   F  +   +P TT++++++     G+         A G   G  F + +V++  +PFL+GL
Sbjct:  826 SYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGL 1007          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 49/183 (26.78%), Postives = 87/183 (47.54%), Query Frame = 3
Query:    9 QCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQC--AHGSGLGDYFCSVYVVLCFFPFLRGL 548
            Q LAY+  + +   S+P + Y  LPA C++T    +P +     ++ L LF+   L ++LE   +G+SI   W N     I   SA LF +    L+     +  F +T K     +  E+ +   +   +P T++++++L     G     ++   A G   G  F + +V+L  +PFL+GL
Sbjct:  753 QRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTADDLEFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGL 935          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 52/184 (28.26%), Postives = 85/184 (46.20%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE----VMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            LAY+  + +   SIP L Y  +PA C++T    +P +     +  LALFL      +LE   +G+SI   W N     I   SA LF +    L+     +  F +T K   S + DE     +F  +   +P TT+I++++     G+         + G   G  F + +V++  +PFL+GL
Sbjct:  819 LAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSK-GASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 1001          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 47/185 (25.41%), Postives = 85/185 (45.95%), Query Frame = 3
Query:    3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            F +  +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+   +  +LE   +G++I  WW N     I   S+ LF +    L+     +  F +T K     +  E+  F  +   +P TT++L++      G+    +      G   G  F + +V++  +PFL+GL
Sbjct:  859 FLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFVTGILEMRWSGVAIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGVDTSFTVTSKAGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1043          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 44/186 (23.66%), Postives = 84/186 (45.16%), Query Frame = 3
Query:   39 WGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV---------MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569
            W   S+P + Y+ +PA  ++  +   P++  P     + +F +  LY+L E + +G +++ WW    M  +   +++L+G ++   +  G S+  FEIT K+   SD DE              SP FV   T+ L++      GL ++ +   +        C + +V+   P    +F+   KG
Sbjct:  524 WAANSLPTIYYVMIPALGLVKGTPLFPEIMSPWATPFIYVFCVKTLYSLYEALLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKV---SDGDEAKRYEQEILEFGSSSPEFVIIATVALLNFVCLVAGLSKIMAGVWNVFLPQVILCGL-IVITNIPIYEAMFVRKDKG 705          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 47/180 (26.11%), Postives = 81/180 (45.00%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+      +LE   +G+ I  WW N     I   S+ LF L    L+     +  F +T K     +  E+  F  +   +P TT++L++      G+    +      G   G  F + +V++  +PFL+GL
Sbjct:  865 SYINSIVYPFTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVIAGIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1044          
The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CESA2_ORYSI2.700e-1328.49Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ORYSJ4.606e-1327.96Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA5_ARATH6.016e-1327.62Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA9_ORYSJ1.026e-1226.92Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.026e-1226.92Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA8_ARATH1.340e-1226.78Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA4_ARATH2.985e-1228.26Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA6_ORYSJ5.092e-1225.41Probable cellulose synthase A catalytic subunit 6 ... [more]
CSLE6_ORYSJ8.686e-1223.66Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CESA3_ORYSJ1.482e-1126.11Probable cellulose synthase A catalytic subunit 3 ... [more]

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Properties
Property NameValue
Genbank descriptionC07009G03SK SaltLeaf1 Citrus clementina cDNA clone C07009G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bp
AATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCGC
TCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCAC
CAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCTC
TTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCAA
GCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGTATGGCCCGAAT
TGTCACAACAAGTGCATGGTTATTTGGTCTTGTAAACGCCGCGCTCGAGC
AGTTTGGATTCTCCGAGGCAGTTTTTGAAATTACGCAAAAAATTCATCGA
TCTAGCGATGTCGATGAAGTGATGTTCGACGACTCTCCTTTCTTTGTTCC
CGGCACCACAATTATTCTGGTGCACCTCGCTGCATGGGCTACCGGCTTGC
TAAGGTTGCAATCACAATGTGCGCATGGCTCAGGGCTAGGAGACTACTTT
TGCAGTGTGTATGTGGTGCTATGCTTCTTTCCTTTTTTGCGAGGGCTATT
CATGACAGGGAAAAAGGGGA
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