CX300396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13 Identity = 53/186 (28.49%), Postives = 86/186 (46.24%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548 F + AY+ + L SIP L Y LPA C++T +P++ + ++LFL +LE +G+ I WW N I SA LF + L+ + F +T K D E+ MF + +P TTI++++L G+ + G G F + +V++ +PFL+GL Sbjct: 840 FLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1025
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13 Identity = 52/186 (27.96%), Postives = 86/186 (46.24%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI-HRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548 F + AY+ + L SIP L Y LPA C++T +P++ + ++LF+ +LE +G+ I WW N I SA LF + L+ + F +T K D E+ MF + +P TTI++++L G+ + G G F + +V++ +PFL+GL Sbjct: 848 FLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1033
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13 Identity = 50/181 (27.62%), Postives = 86/181 (47.51%), Query Frame = 3 Query: 15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQ--CAHGSGLGDYFCSVYVVLCFFPFLRGL 548 L+Y+ + + SIP L Y +LPA C++T +P++ ++ +ALF + +LE + I WW N I SA LF L L+ E F +T K + E+ +F + +P TT++++++ G+ S + G G F + +V+L +PFL+GL Sbjct: 841 LSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASILFMALFGSIAVTGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGL 1021
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12 Identity = 49/182 (26.92%), Postives = 82/182 (45.05%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548 +Y+ + S+P L Y LPA C++T +P + L +ALF+ +LE +G+SI WW N I SA LF +V L+ + F +T K D + F + +P TT++++++ G+ A G G F + +V++ +PFL+GL Sbjct: 826 SYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGL 1007
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12 Identity = 49/182 (26.92%), Postives = 82/182 (45.05%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548 +Y+ + S+P L Y LPA C++T +P + L +ALF+ +LE +G+SI WW N I SA LF +V L+ + F +T K D + F + +P TT++++++ G+ A G G F + +V++ +PFL+GL Sbjct: 826 SYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGL 1007
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12 Identity = 49/183 (26.78%), Postives = 87/183 (47.54%), Query Frame = 3 Query: 9 QCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQC--AHGSGLGDYFCSVYVVLCFFPFLRGL 548 Q LAY+ + + S+P + Y LPA C++T +P + ++ L LF+ L ++LE +G+SI W N I SA LF + L+ + F +T K + E+ + + +P T++++++L G ++ A G G F + +V+L +PFL+GL Sbjct: 753 QRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTADDLEFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGL 935
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12 Identity = 52/184 (28.26%), Postives = 85/184 (46.20%), Query Frame = 3 Query: 15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE----VMFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548 LAY+ + + SIP L Y +PA C++T +P + + LALFL +LE +G+SI W N I SA LF + L+ + F +T K S + DE +F + +P TT+I++++ G+ + G G F + +V++ +PFL+GL Sbjct: 819 LAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSK-GASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 1001
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12 Identity = 47/185 (25.41%), Postives = 85/185 (45.95%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548 F + +Y+ + + SIP L Y LPA C++T P++ L ++LF+ + +LE +G++I WW N I S+ LF + L+ + F +T K + E+ F + +P TT++L++ G+ + G G F + +V++ +PFL+GL Sbjct: 859 FLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFVTGILEMRWSGVAIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGVDTSFTVTSKAGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1043
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12 Identity = 44/186 (23.66%), Postives = 84/186 (45.16%), Query Frame = 3 Query: 39 WGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV---------MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 W S+P + Y+ +PA ++ + P++ P + +F + LY+L E + +G +++ WW M + +++L+G ++ + G S+ FEIT K+ SD DE SP FV T+ L++ GL ++ + + C + +V+ P +F+ KG Sbjct: 524 WAANSLPTIYYVMIPALGLVKGTPLFPEIMSPWATPFIYVFCVKTLYSLYEALLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKV---SDGDEAKRYEQEILEFGSSSPEFVIIATVALLNFVCLVAGLSKIMAGVWNVFLPQVILCGL-IVITNIPIYEAMFVRKDKG 705
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11 Identity = 47/180 (26.11%), Postives = 81/180 (45.00%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548 +Y+ + + SIP L Y LPA C++T P++ L ++LF+ +LE +G+ I WW N I S+ LF L L+ + F +T K + E+ F + +P TT++L++ G+ + G G F + +V++ +PFL+GL Sbjct: 865 SYINSIVYPFTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVIAGIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1044 The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bpback to top |