CX300396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11 Identity = 44/181 (24.31%), Postives = 86/181 (47.51%), Query Frame = 3 Query: 15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQ--CAHGSGLGDYFCSVYVVLCFFPFLRGL 548 L+Y+ + + S+P + Y +LPA C++T +P++ ++ +ALF + +LE + I WW N I SA LF L L+ + F +T K + ++ +F + +P T++++++ G+ S + G G F +++V++ +PFL+GL Sbjct: 856 LSYINSVVYPWTSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAADDGEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGL 1036
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11 Identity = 43/180 (23.89%), Postives = 84/180 (46.67%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548 +Y+ + + S+P L Y +LPA C++T +P++ ++ L +F+ + +LE + I WW N I S+ LF L L+ F +T K + E+ +F + +P TT++++++ G+ + G G F +++V++ +PFL+GL Sbjct: 860 SYINSVVYPWTSLPLLVYCSLPAICLLTGKFIVPEISNYAGILFLLMFMSIAVTGILEMQWGKIGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGL 1039
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11 Identity = 45/186 (24.19%), Postives = 88/186 (47.31%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQ--CAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKK 566 +Y+ + + S+P + Y +LPA C++T +P++ ++ + +F+ + +LE G+ I WW N I S+ LF L L+ F +T K E+ +F + +P TT++++++ G+ S + G G F +++V++ +PFL+G M GK+ Sbjct: 856 SYINSVVYPWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGGVGIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGAFSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKG--MLGKQ 1039
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11 Identity = 46/180 (25.56%), Postives = 81/180 (45.00%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548 +Y+ + + SIP L Y LPA C++T P++ L ++LF+ +LE +G+ I WW N I S+ LF + L+ + F +T K + E+ F + +P TT++L++ G+ + G G F + +V++ +PFL+GL Sbjct: 864 SYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1043
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11 Identity = 46/180 (25.56%), Postives = 81/180 (45.00%), Query Frame = 3 Query: 18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548 +Y+ + + SIP L Y LPA C++T P++ L ++LF+ +LE +G+ I WW N I S+ LF + L+ + F +T K + E+ F + +P TT++L++ G+ + G G F + +V++ +PFL+GL Sbjct: 864 SYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1043 The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bpback to top |