CX300396

Overview
NameCX300396
Unique NameCX300396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 44/181 (24.31%), Postives = 86/181 (47.51%), Query Frame = 3
Query:   15 LAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQ--CAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            L+Y+  + +   S+P + Y +LPA C++T    +P++     ++ +ALF    +  +LE     + I  WW N     I   SA LF L    L+     +  F +T K     +  ++ +F  +   +P  T++++++     G+    S    + G   G  F +++V++  +PFL+GL
Sbjct:  856 LSYINSVVYPWTSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAADDGEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGL 1036          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 43/180 (23.89%), Postives = 84/180 (46.67%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRL--QSQCAHGSGLGDYFCSVYVVLCFFPFLRGL 548
            +Y+  + +   S+P L Y +LPA C++T    +P++     ++ L +F+   +  +LE     + I  WW N     I   S+ LF L    L+        F +T K     +  E+ +F  +   +P TT++++++     G+         + G   G  F +++V++  +PFL+GL
Sbjct:  860 SYINSVVYPWTSLPLLVYCSLPAICLLTGKFIVPEISNYAGILFLLMFMSIAVTGILEMQWGKIGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGL 1039          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 45/186 (24.19%), Postives = 88/186 (47.31%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQ--CAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKK 566
            +Y+  + +   S+P + Y +LPA C++T    +P++     ++ + +F+   +  +LE    G+ I  WW N     I   S+ LF L    L+        F +T K        E+ +F  +   +P TT++++++     G+    S    + G   G  F +++V++  +PFL+G  M GK+
Sbjct:  856 SYINSVVYPWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGGVGIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGAFSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKG--MLGKQ 1039          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 46/180 (25.56%), Postives = 81/180 (45.00%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+      +LE   +G+ I  WW N     I   S+ LF +    L+     +  F +T K     +  E+  F  +   +P TT++L++      G+    +      G   G  F + +V++  +PFL+GL
Sbjct:  864 SYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1043          
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 46/180 (25.56%), Postives = 81/180 (45.00%), Query Frame = 3
Query:   18 AYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDEV-MFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSG--LGDYFCSVYVVLCFFPFLRGL 548
            +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+      +LE   +G+ I  WW N     I   S+ LF +    L+     +  F +T K     +  E+  F  +   +P TT++L++      G+    +      G   G  F + +V++  +PFL+GL
Sbjct:  864 SYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGL 1043          
The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CESA6_ARATH1.935e-1124.31Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA9_ARATH3.301e-1123.89Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA2_ARATH4.311e-1124.19Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA5_ORYSJ7.353e-1125.56Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI7.353e-1125.56Probable cellulose synthase A catalytic subunit 5 ... [more]

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Properties
Property NameValue
Genbank descriptionC07009G03SK SaltLeaf1 Citrus clementina cDNA clone C07009G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bp
AATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCGC
TCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCAC
CAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCTC
TTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCAA
GCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGTATGGCCCGAAT
TGTCACAACAAGTGCATGGTTATTTGGTCTTGTAAACGCCGCGCTCGAGC
AGTTTGGATTCTCCGAGGCAGTTTTTGAAATTACGCAAAAAATTCATCGA
TCTAGCGATGTCGATGAAGTGATGTTCGACGACTCTCCTTTCTTTGTTCC
CGGCACCACAATTATTCTGGTGCACCTCGCTGCATGGGCTACCGGCTTGC
TAAGGTTGCAATCACAATGTGCGCATGGCTCAGGGCTAGGAGACTACTTT
TGCAGTGTGTATGTGGTGCTATGCTTCTTTCCTTTTTTGCGAGGGCTATT
CATGACAGGGAAAAAGGGGA
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