CX300414

Overview
NameCX300414
Unique NameCX300414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THERP (50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R  RH R+R K+ GTPERPRL VFRSNKH+Y Q+IDDT+ HTL +AST++K + +       P IE ++ VG+++ +
Sbjct:   12 RKRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFP-DPHPKIEEARIVGQVVGE 87          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +K   R  RH+R+R K+ GTPERPRL VFRSNKH+Y QVIDD    TL SAST+ K  + E    +G     + KVGE++AK
Sbjct:    6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE----NGSDTAAAAKVGELVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THEPX (50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514) GN=rplR PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+P  + E R  RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL  AST+   +      + G   + +K VGE+IAK
Sbjct:    3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAK 84          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THEP3 (50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+P  + E R  RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL  AST+   +      + G   + +K VGE+IAK
Sbjct:    3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAK 84          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_NOSP7 (50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplR PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIA 412
            T+RE +  RH R+R K+ G+PERPRL VFRSN+H+Y QVIDD++  T+ +AST++  +   L  +SG   + S +VG++IA
Sbjct:    4 TRRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSSL--ASGANRDASVQVGKLIA 82          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CLOD6 (50S ribosomal protein L18 OS=Clostridium difficile (strain 630) GN=rplR PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  173 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            K  +R  RH R+R+KI GT +RPRLCVFRS  ++Y Q+IDDTK  TL +AS+++  +   ++++     E +KKVGE++AK
Sbjct:    7 KNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK--EAAKKVGELVAK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACHD (50S ribosomal protein L18 OS=Bacillus halodurans GN=rplR PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+P  K   R  RH+ +R+ I GTPERPRL VFRS+KH+Y Q+IDD    T+A+AS++ K    EL   +G  +E +KKVGE++AK
Sbjct:    3 TKP-IKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLDK----ELKLENGGNVEAAKKVGELVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_STACT (50S ribosomal protein L18 OS=Staphylococcus carnosus (strain TM300) GN=rplR PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  173 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            K + R  RH+R+R  + GT ++PRL V+RSNKH+Y Q+IDDTK  TL  AST  K   +E    +G  +E+S KVGE IAK
Sbjct:    7 KNKVRLKRHARVRSNLSGTAQKPRLNVYRSNKHIYAQIIDDTKGVTLVQASTQDKDFENE----TGSKVELSSKVGEAIAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CHLAD (50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplR PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAK 415
            RT RE R  RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST++K       +S  P +  +++   VG++IA+
Sbjct:    4 RTPRELRLRRHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEK------GWSGSPELTKTQEAALVGKLIAE 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACSU (50S ribosomal protein L18 OS=Bacillus subtilis GN=rplR PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +K   R  RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD    TLASAST+ K ++ E   S+G T   + KVGE++AK
Sbjct:    6 SKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDT-SAATKVGELVAK 83          
The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
RL18_THERP4.484e-1650.6550S ribosomal protein L18 OS=Thermomicrobium roseu... [more]
RL18_BACLD4.484e-1652.4450S ribosomal protein L18 OS=Bacillus licheniformi... [more]
RL18_THEPX5.856e-1652.3350S ribosomal protein L18 OS=Thermoanaerobacter sp... [more]
RL18_THEP35.856e-1652.3350S ribosomal protein L18 OS=Thermoanaerobacter ps... [more]
RL18_NOSP75.856e-1648.1550S ribosomal protein L18 OS=Nostoc punctiforme (s... [more]
RL18_CLOD65.856e-1646.9150S ribosomal protein L18 OS=Clostridium difficile... [more]
RL18_BACHD7.648e-1650.0050S ribosomal protein L18 OS=Bacillus halodurans G... [more]
RL18_STACT9.989e-1650.6250S ribosomal protein L18 OS=Staphylococcus carnos... [more]
RL18_CHLAD9.989e-1651.1650S ribosomal protein L18 OS=Chloroflexus aggregan... [more]
RL18_BACSU9.989e-1653.6650S ribosomal protein L18 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07010A03SK SaltLeaf1 Citrus clementina cDNA clone C07010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bp
AGGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGATGCTTAATC
AGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTTCAAAATTA
GTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTCATCGTCGA
AGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGCCCGCCATT
CTCGCATCAGAAAGAAGATTGATGGGACTCCTGAGAGGCCGAGGCTGTGT
GTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGATGATACTAA
GATGCACACACTTGCTTCAGCTTCGACGATGCAGAAGCCCATCTCTGACG
AGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGAAGGTGGGT
GAAATGATTGCAAAGTCATGT
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