CX300414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THERP (50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 2 Query: 185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R RH R+R K+ GTPERPRL VFRSNKH+Y Q+IDDT+ HTL +AST++K + + P IE ++ VG+++ + Sbjct: 12 RKRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFP-DPHPKIEEARIVGQVVGE 87
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 +K R RH+R+R K+ GTPERPRL VFRSNKH+Y QVIDD TL SAST+ K + E +G + KVGE++AK Sbjct: 6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE----NGSDTAAAAKVGELVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THEPX (50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514) GN=rplR PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16 Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+P + E R RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL AST+ + + G + +K VGE+IAK Sbjct: 3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAK 84
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THEP3 (50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16 Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+P + E R RH R+RKK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL AST+ + + G + +K VGE+IAK Sbjct: 3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAK 84
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_NOSP7 (50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplR PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16 Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIA 412 T+RE + RH R+R K+ G+PERPRL VFRSN+H+Y QVIDD++ T+ +AST++ + L +SG + S +VG++IA Sbjct: 4 TRRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSSL--ASGANRDASVQVGKLIA 82
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CLOD6 (50S ribosomal protein L18 OS=Clostridium difficile (strain 630) GN=rplR PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16 Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 2 Query: 173 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 K +R RH R+R+KI GT +RPRLCVFRS ++Y Q+IDDTK TL +AS+++ + ++++ E +KKVGE++AK Sbjct: 7 KNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK--EAAKKVGELVAK 85
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACHD (50S ribosomal protein L18 OS=Bacillus halodurans GN=rplR PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16 Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+P K R RH+ +R+ I GTPERPRL VFRS+KH+Y Q+IDD T+A+AS++ K EL +G +E +KKVGE++AK Sbjct: 3 TKP-IKNVARKKRHAHVRRTITGTPERPRLNVFRSSKHIYAQLIDDVNGVTVAAASSLDK----ELKLENGGNVEAAKKVGELVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_STACT (50S ribosomal protein L18 OS=Staphylococcus carnosus (strain TM300) GN=rplR PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16 Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 2 Query: 173 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 K + R RH+R+R + GT ++PRL V+RSNKH+Y Q+IDDTK TL AST K +E +G +E+S KVGE IAK Sbjct: 7 KNKVRLKRHARVRSNLSGTAQKPRLNVYRSNKHIYAQIIDDTKGVTLVQASTQDKDFENE----TGSKVELSSKVGEAIAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CHLAD (50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplR PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAK 415 RT RE R RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST++K +S P + +++ VG++IA+ Sbjct: 4 RTPRELRLRRHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEK------GWSGSPELTKTQEAALVGKLIAE 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACSU (50S ribosomal protein L18 OS=Bacillus subtilis GN=rplR PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16 Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 +K R RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD TLASAST+ K ++ E S+G T + KVGE++AK Sbjct: 6 SKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDT-SAATKVGELVAK 83 The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 281
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bpback to top |