CX300414

Overview
NameCX300414
Unique NameCX300414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACA2 (50S ribosomal protein L18 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplR PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +K   R  RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD    TLASAST+ K ++ E   S+G +   + KVGE++AK
Sbjct:    6 SKNAARQKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDS-AAAAKVGELVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNPW (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH7803) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            ++++    RH R+R+ + GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L  ++G T + S  VGE++AK
Sbjct:    5 SRKQQTQKRHRRLRRHLSGTADRPRLAVFRSNSHIYAQVIDDAAQSTLCSASTLDKDLRTSLT-ATGSTCDASVAVGELVAK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNJB (50S ribosomal protein L18 OS=Synechococcus sp. GN=rplR PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  167 RTKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +T R+  T R H RIR+K+ GT ERPRL VFRS++H+Y QVIDD   HTLASAST+ + + ++   +   T E +  VG  +A+
Sbjct:    2 KTSRKITTQRRHRRIRRKVFGTAERPRLAVFRSHRHIYAQVIDDVAQHTLASASTLDRELREKFKETGTATQEAAALVGRSVAE 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNJA (50S ribosomal protein L18 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T++     RH RIR+K+ GTPERPRL VFRS++H+Y QVIDD   HTL SAST+ + + +        T E +  VG  +A+
Sbjct:    4 TRKAATQRRHRRIRRKVFGTPERPRLAVFRSHRHIYAQVIDDVAQHTLVSASTLDRELREAFKDIGTATREAAAVVGRSVAQ 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_MACCJ (50S ribosomal protein L18 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  173 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            K + R  RH+R+R K+ GT ERPRL V+RSNKH+Y QVIDD K  TLA AST  K     L   +   +E + KVGE +AK
Sbjct:    7 KNKVRMKRHARVRSKLAGTTERPRLNVYRSNKHIYAQVIDDVKGVTLAQASTQDK----NLGLETTSNVEAAAKVGEAVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CHLSY (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAK 415
            RT RE R  RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST +K       +S  P +  +++   VG++IA+
Sbjct:    4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAE 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CHLAA (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAK 415
            RT RE R  RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST +K       +S  P +  +++   VG++IA+
Sbjct:    4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAE 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACSK (50S ribosomal protein L18 OS=Bacillus clausii (strain KSM-K16) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+P  K   R  RH+ +R+ + GTP+RPRL VFRS+KH+Y Q+IDD    TLA AST+ K    EL   +G   E ++KVGE++ K
Sbjct:    3 TKPN-KNAGRKKRHAHVRRTLSGTPQRPRLNVFRSSKHIYAQLIDDVNGVTLAQASTLDK----ELGLENGGNKEAARKVGELVGK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_ACIC1 (50S ribosomal protein L18 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplR PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R  T+   R  RH R+RKKI GTPERPRL V RS +H++VQ++DDT+ HTLASAS+ +     E+   +G     +++VG++IA+
Sbjct:   11 RGSTRTAARMRRHFRVRKKISGTPERPRLVVHRSARHVFVQIVDDTRGHTLASASSFE----PEMRSFAGDKTAKARRVGQLIAE 91          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RK18_CYAPA (50S ribosomal protein L18, cyanelle OS=Cyanophora paradoxa GN=rpl18 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+++    RH R+R+K+ GT ERPRL VFRS++H+Y Q+IDDT+  TLA++ST++  + +  + SS  T   S  VG++IAK
Sbjct:    4 TRKQATQRRHRRVRRKVFGTSERPRLAVFRSHQHIYAQIIDDTQHRTLAASSTLEPSVKNS-ELSSTSTCAASAIVGQLIAK 84          
The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
RL18_BACA23.796e-1552.4450S ribosomal protein L18 OS=Bacillus amyloliquefa... [more]
RL18_SYNPW4.957e-1546.3450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_SYNJB4.957e-1547.6250S ribosomal protein L18 OS=Synechococcus sp. GN=... [more]
RL18_SYNJA4.957e-1546.3450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_MACCJ6.475e-1551.8550S ribosomal protein L18 OS=Macrococcus caseolyti... [more]
RL18_CHLSY6.475e-1551.1650S ribosomal protein L18 OS=Chloroflexus aurantia... [more]
RL18_CHLAA6.475e-1551.1650S ribosomal protein L18 OS=Chloroflexus aurantia... [more]
RL18_BACSK6.475e-1547.6750S ribosomal protein L18 OS=Bacillus clausii (str... [more]
RL18_ACIC16.475e-1547.0650S ribosomal protein L18 OS=Acidothermus cellulol... [more]
RK18_CYAPA6.475e-1546.3450S ribosomal protein L18, cyanelle OS=Cyanophora ... [more]

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Properties
Property NameValue
Genbank descriptionC07010A03SK SaltLeaf1 Citrus clementina cDNA clone C07010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bp
AGGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGATGCTTAATC
AGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTTCAAAATTA
GTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTCATCGTCGA
AGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGCCCGCCATT
CTCGCATCAGAAAGAAGATTGATGGGACTCCTGAGAGGCCGAGGCTGTGT
GTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGATGATACTAA
GATGCACACACTTGCTTCAGCTTCGACGATGCAGAAGCCCATCTCTGACG
AGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGAAGGTGGGT
GAAATGATTGCAAAGTCATGT
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