CX300414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACA2 (50S ribosomal protein L18 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplR PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15 Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 +K R RH+R+R K+ GT ERPRL VFRSNKH+Y Q+IDD TLASAST+ K ++ E S+G + + KVGE++AK Sbjct: 6 SKNAARQKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVE---STGDS-AAAAKVGELVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNPW (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH7803) GN=rplR PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15 Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 ++++ RH R+R+ + GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L ++G T + S VGE++AK Sbjct: 5 SRKQQTQKRHRRLRRHLSGTADRPRLAVFRSNSHIYAQVIDDAAQSTLCSASTLDKDLRTSLT-ATGSTCDASVAVGELVAK 85
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNJB (50S ribosomal protein L18 OS=Synechococcus sp. GN=rplR PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15 Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 2 Query: 167 RTKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 +T R+ T R H RIR+K+ GT ERPRL VFRS++H+Y QVIDD HTLASAST+ + + ++ + T E + VG +A+ Sbjct: 2 KTSRKITTQRRHRRIRRKVFGTAERPRLAVFRSHRHIYAQVIDDVAQHTLASASTLDRELREKFKETGTATQEAAALVGRSVAE 85
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNJA (50S ribosomal protein L18 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplR PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T++ RH RIR+K+ GTPERPRL VFRS++H+Y QVIDD HTL SAST+ + + + T E + VG +A+ Sbjct: 4 TRKAATQRRHRRIRRKVFGTPERPRLAVFRSHRHIYAQVIDDVAQHTLVSASTLDRELREAFKDIGTATREAAAVVGRSVAQ 85
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_MACCJ (50S ribosomal protein L18 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplR PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 173 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 K + R RH+R+R K+ GT ERPRL V+RSNKH+Y QVIDD K TLA AST K L + +E + KVGE +AK Sbjct: 7 KNKVRMKRHARVRSKLAGTTERPRLNVYRSNKHIYAQVIDDVKGVTLAQASTQDK----NLGLETTSNVEAAAKVGEAVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CHLSY (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplR PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAK 415 RT RE R RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST +K +S P + +++ VG++IA+ Sbjct: 4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAE 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CHLAA (50S ribosomal protein L18 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplR PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAK 415 RT RE R RH+RIRK++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST +K +S P + +++ VG++IA+ Sbjct: 4 RTPRELRLRRHNRIRKRVFGTPERPRLNVFRSHVHIYAQVIDDTVGHTLVAASTNEK------GWSGSPELTKTQEAALVGKLIAE 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACSK (50S ribosomal protein L18 OS=Bacillus clausii (strain KSM-K16) GN=rplR PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 158 TRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+P K R RH+ +R+ + GTP+RPRL VFRS+KH+Y Q+IDD TLA AST+ K EL +G E ++KVGE++ K Sbjct: 3 TKPN-KNAGRKKRHAHVRRTLSGTPQRPRLNVFRSSKHIYAQLIDDVNGVTLAQASTLDK----ELGLENGGNKEAARKVGELVGK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_ACIC1 (50S ribosomal protein L18 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplR PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2 Query: 161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R T+ R RH R+RKKI GTPERPRL V RS +H++VQ++DDT+ HTLASAS+ + E+ +G +++VG++IA+ Sbjct: 11 RGSTRTAARMRRHFRVRKKISGTPERPRLVVHRSARHVFVQIVDDTRGHTLASASSFE----PEMRSFAGDKTAKARRVGQLIAE 91
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RK18_CYAPA (50S ribosomal protein L18, cyanelle OS=Cyanophora paradoxa GN=rpl18 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+++ RH R+R+K+ GT ERPRL VFRS++H+Y Q+IDDT+ TLA++ST++ + + + SS T S VG++IAK Sbjct: 4 TRKQATQRRHRRVRRKVFGTSERPRLAVFRSHQHIYAQIIDDTQHRTLAASSTLEPSVKNS-ELSSTSTCAASAIVGQLIAK 84 The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 281
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bpback to top |