CX300480

Overview
NameCX300480
Unique NameCX300480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G  A +++H  + D T ++LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:  124 GVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G  A +++H  + D T ++LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:  124 GVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.419e-27
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA VI+H  D   T IKLPSG  K +   CRA IG VAGGGR EKP+ KAG  YH  + K   WP+VRGVAMN V+HP GGGN QH G  +T+ R   PG+KVG I
Sbjct:  127 GCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHI 232          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.095e-26
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G Y VV+      D   +KL S     V S  RA++G VAGGG TEKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  122 GTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.095e-26
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G  A +++H  D D   I+LPSG  K +   C+A IG VAGGGRTEKP +KAG  +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:  124 GTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.868e-26
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YAVV+  +   D   I+LPS   K V +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  122 GSYAVVVGKS--GDRVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA++++H  +   T +++PSG  K +   CRA IG VAGGGRTEKP ++AGN ++K   K   WP VRGVAMN V+HP GGG  QH G   TV R+ PPG+KVG I
Sbjct:  124 GVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G  A +++H  D +   ++LPSG  + +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RD PPG+KVG
Sbjct:  124 GVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVG 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G  A +++H  D +   +KLPSG  K +   CRA IG VAGGGRT+KP +KAGN +HK + +   WP VRGVAMN V+HP GGG  QH G   ++ R+APPG+KVG
Sbjct:  124 GVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.434e-26
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA V++H  +++ T + +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK + +   +P+V GVAMNPV+HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  124 GVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_HALSA4.915e-2754.7250S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS34.915e-2754.7250S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_META36.419e-2757.4150S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_SULTO1.095e-2657.4150S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_HALWD1.095e-2654.7250S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_SULSO1.868e-2657.4150S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_UNCMA3.186e-2652.7850S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_NATPD3.186e-2652.8350S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_HALMA3.186e-2652.8350S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_METBF5.434e-2651.8550S ribosomal protein L2P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionC07010F11SK SaltLeaf1 Citrus clementina cDNA clone C07010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bp
GGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACTACTA
GGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGT
GCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTT
GAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGC
CCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGT
GGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACC
CCCTGGCCAAAAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTA
GAGGACAAGCAGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAAAGTTTC
GCTTGAGCTCATTTTAATTTTGTTTTGTGCTGGTGAACATCTTCATATGG
TTGTTATCTGTTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTA
ACTTCTTGTGATTAGTACATTGAAAGTGAGAGTAT
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