CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.011e-15
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 2

Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72

HSP 2 Score: 32.7278 bits (73), Expect = 5.011e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.121e-14
Identity = 36/62 (58.06%), Postives = 40/62 (64.52%), Query Frame = 2

Query:   50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNG*QGFE 235
            P SRS +AGLQFPVGR+HR LK               Y AAILEYLTAEVLELAGN  + F+
Sbjct:   27 PQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFK 88

HSP 2 Score: 30.0314 bits (66), Expect = 3.121e-14
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+D +V+RITPRHL
Sbjct:   81 GNASKDFKVRRITPRHL 97

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.868e-14
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            ++S+RAGLQFPVGR+HR LK               YT+AILEYLTAEVLELAGN
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGN 78

HSP 2 Score: 31.9574 bits (71), Expect = 6.868e-14
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G AS+D+R+KRITPRHL
Sbjct:   77 GNASKDMRLKRITPRHL 93

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2AV_XENLA	5.011e-15	65.45	Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3	[more]
H2AV_RABIT	5.011e-15	65.45	Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE...	[more]
H2AV_PAGMA	5.011e-15	65.45	Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3	[more]
H2AV_MOUSE	5.011e-15	65.45	Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3	[more]
H2AV_HUMAN	5.011e-15	65.45	Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3	[more]
H2AV_DANRE	5.011e-15	65.45	Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3	[more]
H2AV_CHICK	5.011e-15	65.45	Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2	[more]
H2AV_BOVIN	5.011e-15	65.45	Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3	[more]
H2AV_TETTH	3.121e-14	58.06	Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P...	[more]
H2AZ_USTMA	6.868e-14	61.11	Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG