CX300627 | Citrus Genome Database

Overview


Name	CX300627
Unique Name	CX300627
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	263

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2C_MOUSE (Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.817e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2

Query:   56 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYMAAVLEYLTAEILELAGN 69

HSP 2 Score: 23.0978 bits (48), Expect = 2.817e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  213 GMASRDLRVKRITPRHL 263
            G A+RD +  RI PRHL
Sbjct:   68 GNAARDNKKTRIIPRHL 84

The following BLAST results are available for this feature:

BLAST of CX300627 vs. ExPASy Swiss-Prot

BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
H2AJ_HUMAN	2.817e-11	64.81	Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1	[more]
H2AJ_CHICK	2.817e-11	64.81	Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1	[more]
H2AJ_BOVIN	2.817e-11	64.81	Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1	[more]
H2A4_CHICK	2.817e-11	64.81	Histone H2A-IV OS=Gallus gallus PE=1 SV=2	[more]
H2A3_RAT	2.817e-11	64.81	Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3	[more]
H2A3_MOUSE	2.817e-11	64.81	Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=...	[more]
H2A3_HUMAN	2.817e-11	64.81	Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=...	[more]
H2A2C_MOUSE	2.817e-11	64.81	Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac ...	[more]
H2A2C_HUMAN	2.817e-11	64.81	Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ...	[more]
H2A2C_BOVIN	2.817e-11	64.81	Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE...	[more]

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Properties


Property Name	Value
Genbank description	C07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG